Variant report

Variant	rs1049862
Chromosome Location	chr10:61789272-61789273
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10821657	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10821658	0.82[ASN][1000 genomes]
rs10821659	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.82[ASN][1000 genomes]
rs10994158	0.94[CHB][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs11597421	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11813307	0.81[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.81[MEX][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12357206	0.84[ASW][hapmap];0.96[CEU][hapmap];0.89[CHB][hapmap];0.89[CHD][hapmap];0.98[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.98[TSI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7906905	1.00[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.82[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:61783600-61801200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr10:61786000-61795600	Weak transcription	Placenta	Placenta
3	chr10:61786400-61815000	Weak transcription	Left Ventricle	heart
4	chr10:61787800-61791000	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr10:61788200-61789600	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr10:61788400-61790200	Weak transcription	K562	blood
7	chr10:61788600-61789400	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr10:61788600-61789800	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr10:61788800-61790000	Enhancers	Fetal Brain Male	brain
10	chr10:61788800-61792600	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr10:61788800-61803600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:61789000-61798000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr10:61789000-61819200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:61789200-61789400	Enhancers	HUES64 Cell Line	embryonic stem cell
15	chr10:61789200-61789600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:61789200-61789600	Flanking Active TSS	Fetal Lung	lung
17	chr10:61789200-61789600	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr10:61789200-61789800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:61789200-61790600	Enhancers	Fetal Intestine Large	intestine
20	chr10:61789200-61793600	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr10:61789200-61802800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links