Variant report
| Variant | rs10499520 |
|---|---|
| Chromosome Location | chr7:21031746-21031747 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:21030868..21031815-chr7:21293621..21294401,4 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10229329 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10231756 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10240922 | 0.98[EUR][1000 genomes] |
| rs10246458 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10263153 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs10265596 | 0.98[EUR][1000 genomes] |
| rs10270424 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs10275186 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11766574 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs11769317 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11773336 | 0.93[EUR][1000 genomes] |
| rs12113935 | 0.83[AFR][1000 genomes] |
| rs12532948 | 1.00[EUR][1000 genomes] |
| rs12533676 | 0.97[EUR][1000 genomes] |
| rs12668632 | 0.95[EUR][1000 genomes] |
| rs13221970 | 0.95[EUR][1000 genomes] |
| rs13246880 | 0.95[EUR][1000 genomes] |
| rs13340545 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2390411 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs35462998 | 0.84[AFR][1000 genomes] |
| rs41304921 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4365987 | 0.96[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs4598145 | 0.84[AFR][1000 genomes] |
| rs73263890 | 0.92[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73263897 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs73268090 | 1.00[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs73269804 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7784357 | 1.00[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs7798796 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs7811627 | 0.84[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1030726 | chr7:20506095-21086719 | Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv830920 | chr7:21014535-21201580 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv971201 | chr7:21028141-21034740 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:21028600-21032200 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
| 2 | chr7:21031400-21031800 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
