Variant report

Variant	rs10500013
Chromosome Location	chr7:112595762-112595763
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112578925..112581917-chr7:112594123..112596440,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164603	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10229725	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10232962	1.00[CHB][hapmap]
rs10233315	0.93[ASN][1000 genomes]
rs10237671	0.93[ASN][1000 genomes]
rs10241709	1.00[CHB][hapmap]
rs10265199	1.00[CHB][hapmap]
rs10268162	1.00[CHB][hapmap]
rs12112310	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12112671	1.00[CHB][hapmap]
rs17159980	1.00[CHB][hapmap]
rs17160084	1.00[CHB][hapmap]
rs1868588	1.00[CHB][hapmap]
rs2060636	1.00[CHB][hapmap]
rs28546198	0.86[EUR][1000 genomes]
rs28548291	1.00[ASN][1000 genomes]
rs28603026	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4730566	0.93[ASN][1000 genomes]
rs6964755	1.00[CHB][hapmap]
rs6968530	1.00[CHB][hapmap]
rs7341402	1.00[CHB][hapmap]
rs7777041	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7780323	1.00[ASN][1000 genomes]
rs7794808	0.82[CEU][hapmap]
rs7798366	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs7800661	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758131	chr7:112492127-112768628	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv2759556	chr7:112492127-112768628	Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3692941	chr7:112571420-112614215	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
4	nsv1027981	chr7:112577657-112613212	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
5	nsv1020911	chr7:112581515-112615249	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112594200-112630400	Weak transcription	Left Ventricle	heart

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