Variant report

Variant	rs10500834
Chromosome Location	chr11:18638712-18638713
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:18635208..18638912-chr11:18654317..18656685,3	MCF-7	breast:
2	chr11:18626711..18629551-chr11:18638352..18640107,2	MCF-7	breast:
3	chr11:18629851..18633818-chr11:18636242..18638829,5	K562	blood:

Variant related genes	Relation type
ENSG00000179119	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10128711	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832950	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832954	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10832956	0.96[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10832961	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10832962	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11024735	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11024737	0.91[YRI][hapmap]
rs11024739	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11024743	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12365747	0.91[YRI][hapmap]
rs2084220	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2166519	0.91[YRI][hapmap]
rs2896537	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4237722	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4757674	0.81[ASN][1000 genomes]
rs4757676	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4757678	0.91[YRI][hapmap]
rs7943121	1.00[CEU][hapmap];0.96[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949248	chr11:17791822-18692687	Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	156 gene(s)	inside rSNPs	diseases
2	nsv553633	chr11:18311701-19058451	Weak transcription Strong transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv1042155	chr11:18435855-18697576	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
4	nsv1046886	chr11:18547568-18781448	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
5	nsv540956	chr11:18547568-18781448	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
6	nsv516413	chr11:18628418-18643758	Enhancers Genic enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:18624800-18640800	Weak transcription	Right Atrium	heart
2	chr11:18626200-18638800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:18629000-18654400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:18630400-18639800	Weak transcription	Fetal Heart	heart
5	chr11:18630800-18654800	Weak transcription	Psoas Muscle	Psoas
6	chr11:18636800-18643600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:18637000-18640400	Weak transcription	Stomach Mucosa	stomach
8	chr11:18637000-18645400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr11:18637000-18655200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:18637200-18639400	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr11:18637200-18639800	Weak transcription	Brain Germinal Matrix	brain
12	chr11:18637400-18639400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr11:18637400-18639600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr11:18637400-18640000	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:18637400-18640000	Weak transcription	Fetal Brain Female	brain
16	chr11:18637400-18644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:18637400-18654400	Weak transcription	Brain Angular Gyrus	brain
18	chr11:18637400-18654400	Weak transcription	Fetal Intestine Small	intestine
19	chr11:18637400-18654800	Weak transcription	Esophagus	oesophagus
20	chr11:18637400-18654800	Weak transcription	Lung	lung
21	chr11:18637400-18654800	Weak transcription	Pancreas	Pancrea
22	chr11:18637600-18639200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr11:18637600-18639400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:18637600-18639400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:18637600-18639400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr11:18637600-18639400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr11:18637600-18639400	Weak transcription	NH-A	brain
28	chr11:18637600-18639400	Weak transcription	Osteobl	bone
29	chr11:18637600-18639600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr11:18637600-18639600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:18637600-18639600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr11:18637600-18639600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:18637600-18639600	Weak transcription	Fetal Brain Male	brain
34	chr11:18637600-18639600	Weak transcription	Small Intestine	intestine
35	chr11:18637600-18639600	Weak transcription	HMEC	breast
36	chr11:18637600-18639600	Weak transcription	NHLF	lung
37	chr11:18637600-18639800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr11:18637600-18639800	Weak transcription	Aorta	Aorta
39	chr11:18637600-18639800	Weak transcription	Brain Anterior Caudate	brain
40	chr11:18637600-18639800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr11:18637600-18639800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr11:18637600-18639800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr11:18637600-18640000	Weak transcription	Fetal Stomach	stomach
44	chr11:18637600-18640000	Weak transcription	NHEK	skin
45	chr11:18637600-18640200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr11:18637600-18640200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr11:18637600-18640800	Enhancers	Primary hematopoietic stem cells	blood
48	chr11:18637600-18640800	Weak transcription	Ovary	ovary
49	chr11:18637600-18641800	Weak transcription	Colonic Mucosa	Colon
50	chr11:18637600-18645200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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