Variant report

Variant	rs10502559
Chromosome Location	chr18:28667192-28667193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:28665512..28667530-chr18:28670151..28672364,2	K562	blood:
2	chr18:28641189..28643310-chr18:28664453..28667293,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs28379393	0.89[AFR][1000 genomes]
rs9957742	1.00[YRI][hapmap];0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3388313	chr18:28583296-28693160	Weak transcription Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv530788	chr18:28596461-28751891	Flanking Bivalent TSS/Enh Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:28640800-28680400	Weak transcription	Right Ventricle	heart
2	chr18:28642200-28670800	Weak transcription	Fetal Heart	heart
3	chr18:28642800-28680600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr18:28644400-28671400	Weak transcription	Brain Anterior Caudate	brain
5	chr18:28644800-28673600	Strong transcription	Rectal Mucosa Donor 31	rectum
6	chr18:28645400-28675000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:28646800-28673200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr18:28647000-28679400	Weak transcription	Fetal Kidney	kidney
9	chr18:28647200-28667200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr18:28648600-28678800	Weak transcription	Brain Hippocampus Middle	brain
11	chr18:28649000-28668000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr18:28649200-28680800	Weak transcription	Gastric	stomach
13	chr18:28649400-28679600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr18:28650200-28675800	Weak transcription	Stomach Mucosa	stomach
15	chr18:28652800-28679800	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr18:28654200-28679800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:28654200-28679800	Weak transcription	Lung	lung
18	chr18:28654200-28679800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr18:28654400-28674800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr18:28656600-28673600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
21	chr18:28656600-28680200	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr18:28657400-28673600	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr18:28657400-28679000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr18:28659000-28674200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr18:28659400-28673600	Strong transcription	Rectal Mucosa Donor 29	rectum
26	chr18:28660800-28676400	Weak transcription	Fetal Intestine Small	intestine
27	chr18:28660800-28679800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr18:28660800-28679800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr18:28663000-28679200	Weak transcription	Colonic Mucosa	Colon
30	chr18:28664000-28673600	Strong transcription	HUES48 Cell Line	embryonic stem cell
31	chr18:28664000-28673600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr18:28664800-28671600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr18:28664800-28673600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr18:28665600-28672800	Strong transcription	Liver	Liver
35	chr18:28665800-28667600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr18:28665800-28669400	Strong transcription	NHEK	skin
37	chr18:28665800-28672400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr18:28665800-28672800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr18:28666000-28668000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
40	chr18:28666200-28673400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr18:28666400-28667600	Strong transcription	HepG2	liver
42	chr18:28666400-28667600	Strong transcription	K562	blood
43	chr18:28666400-28667800	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr18:28666400-28667800	Strong transcription	Left Ventricle	heart
45	chr18:28666400-28669400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr18:28666400-28669600	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr18:28666400-28671000	Strong transcription	Adipose Nuclei	Adipose
48	chr18:28666400-28672000	Strong transcription	H1 Cell Line	embryonic stem cell
49	chr18:28666400-28672000	Strong transcription	Fetal Intestine Large	intestine
50	chr18:28666400-28672400	Strong transcription	HUES6 Cell Line	embryonic stem cell

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