Variant report

Variant	rs10503414
Chromosome Location	chr8:10972836-10972837
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10503413	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17152884	0.92[EUR][1000 genomes]
rs17152953	0.84[EUR][1000 genomes]
rs3736015	0.92[EUR][1000 genomes]
rs57551254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57827662	0.84[EUR][1000 genomes]
rs58152481	0.84[EUR][1000 genomes]
rs59757809	0.84[EUR][1000 genomes]
rs60088021	0.84[EUR][1000 genomes]
rs60863755	0.84[EUR][1000 genomes]
rs61063469	0.84[EUR][1000 genomes]
rs7000695	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7008658	0.84[EUR][1000 genomes]
rs7010256	0.84[EUR][1000 genomes]
rs73530504	0.84[EUR][1000 genomes]
rs73530510	0.84[EUR][1000 genomes]
rs73530511	0.84[EUR][1000 genomes]
rs73530513	0.84[EUR][1000 genomes]
rs73530517	0.84[EUR][1000 genomes]
rs73530522	0.84[EUR][1000 genomes]
rs73530525	0.84[EUR][1000 genomes]
rs73530550	0.84[EUR][1000 genomes]
rs73530555	0.84[EUR][1000 genomes]
rs73530560	0.84[EUR][1000 genomes]
rs73545496	1.00[EUR][1000 genomes]
rs73547404	0.84[EUR][1000 genomes]
rs73547414	0.92[EUR][1000 genomes]
rs73547429	0.92[EUR][1000 genomes]
rs73547452	0.84[EUR][1000 genomes]
rs73547456	0.84[EUR][1000 genomes]
rs7819338	0.84[EUR][1000 genomes]
rs7822804	1.00[YRI][hapmap]
rs7840926	0.84[EUR][1000 genomes]
rs7842261	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035072	chr8:10819444-11480692	Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv539473	chr8:10819444-11480692	Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	esv1815171	chr8:10940039-11128712	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
4	nsv1025426	chr8:10942929-11037903	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1026331	chr8:10955941-11046394	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv1027845	chr8:10959666-10995565	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv529399	chr8:10970091-11805960	Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	54 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:10958400-10974800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:10961200-10975400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:10963000-10981200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:10963600-10973600	Weak transcription	Lung	lung
5	chr8:10963600-10974800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr8:10965600-10973600	Weak transcription	Esophagus	oesophagus
7	chr8:10965600-10974200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:10965800-10974400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
9	chr8:10965800-10981600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr8:10966200-10981400	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr8:10966200-10999000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr8:10966400-10974200	Weak transcription	Pancreas	Pancrea
13	chr8:10966400-11026200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:10966600-10974200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:10967200-10974800	Weak transcription	Primary T helper cells fromperipheralblood	blood
16	chr8:10971400-10973200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr8:10971600-10974200	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr8:10971800-10974200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr8:10972000-10975800	Weak transcription	Left Ventricle	heart
20	chr8:10972000-10977400	Weak transcription	Primary B cells from peripheral blood	blood
21	chr8:10972200-10974200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr8:10972600-10973200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr8:10972600-10973800	Weak transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links