Variant report

Variant	rs10506295
Chromosome Location	chr12:51085471-51085472
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51014540..51016372-chr12:51084957..51086648,2	K562	blood:
2	chr12:51080135..51083273-chr12:51084470..51087512,4	MCF-7	breast:

Extended variants
information (count: 131 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:131)

rs_ID	r²[population]
rs1003033	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10431486	0.84[EUR][1000 genomes]
rs10431535	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10444547	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10459233	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs10459234	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10459235	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10506294	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10747584	0.81[EUR][1000 genomes]
rs10747585	0.84[EUR][1000 genomes]
rs10747587	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10783369	0.84[EUR][1000 genomes]
rs10783370	0.84[EUR][1000 genomes]
rs10783371	0.84[EUR][1000 genomes]
rs10783372	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10783373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs10783374	0.84[EUR][1000 genomes]
rs10783378	0.84[EUR][1000 genomes]
rs10783381	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10783382	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10783383	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10783384	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10783389	0.86[CHB][hapmap]
rs10876042	0.82[EUR][1000 genomes]
rs10876043	0.82[EUR][1000 genomes]
rs10876047	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876052	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876053	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876056	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[EUR][1000 genomes]
rs10876058	0.84[EUR][1000 genomes]
rs10876060	0.82[EUR][1000 genomes]
rs10876061	0.86[CHB][hapmap];0.84[JPT][hapmap];0.84[EUR][1000 genomes]
rs10876063	0.84[EUR][1000 genomes]
rs10876065	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876067	0.84[CEU][hapmap];0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs10876068	0.80[AMR][1000 genomes]
rs10876070	1.00[CEU][hapmap];0.81[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876071	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876072	1.00[CEU][hapmap];0.86[CHB][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10876073	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876075	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10876095	0.83[CHB][hapmap]
rs10876096	0.86[CHB][hapmap]
rs10876097	0.86[CHB][hapmap]
rs11169479	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[EUR][1000 genomes]
rs11169480	0.84[EUR][1000 genomes]
rs11169481	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[EUR][1000 genomes]
rs11169487	0.84[EUR][1000 genomes]
rs11169493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs11169498	0.82[EUR][1000 genomes]
rs11169505	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169507	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11169515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11169528	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11169532	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169537	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11169538	0.93[CEU][hapmap];0.85[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169539	0.89[CEU][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11169544	0.81[CHB][hapmap]
rs11169552	0.86[CHB][hapmap]
rs11169560	0.86[CHB][hapmap]
rs11169561	0.90[CHB][hapmap]
rs11613488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs11615933	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12230242	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12231309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12231317	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12580051	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12580479	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12582712	0.84[EUR][1000 genomes]
rs12809086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12827022	0.82[EUR][1000 genomes]
rs1344958	0.86[CHB][hapmap]
rs17124930	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2090851	0.86[EUR][1000 genomes]
rs2264734	0.82[EUR][1000 genomes]
rs2684908	0.90[CEU][hapmap];0.83[EUR][1000 genomes]
rs34867510	0.81[EUR][1000 genomes]
rs35845404	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3742063	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3742064	0.90[CEU][hapmap];0.91[CHB][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3809319	0.86[CHB][hapmap]
rs3825402	0.90[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3893353	0.84[EUR][1000 genomes]
rs3935138	0.89[CEU][hapmap]
rs3935869	0.82[EUR][1000 genomes]
rs4131769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4238106	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4238108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4307773	0.81[CHB][hapmap]
rs4516034	0.84[EUR][1000 genomes]
rs4768850	0.84[EUR][1000 genomes]
rs4768852	0.83[EUR][1000 genomes]
rs4768853	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4768858	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4768866	0.85[CHB][hapmap]
rs4768884	0.84[EUR][1000 genomes]
rs4768888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs4768889	0.84[EUR][1000 genomes]
rs4768892	0.84[EUR][1000 genomes]
rs4768893	0.84[EUR][1000 genomes]
rs4768895	0.84[EUR][1000 genomes]
rs4768899	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4768903	0.95[CHB][hapmap];0.89[JPT][hapmap]
rs4768904	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4768906	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4768907	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768911	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4768912	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768913	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4768914	0.94[CEU][hapmap];0.86[CHB][hapmap];0.83[YRI][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768922	0.86[CHB][hapmap]
rs4768924	0.81[CHB][hapmap]
rs4768925	0.81[CHB][hapmap]
rs55680342	0.82[EUR][1000 genomes]
rs55877451	0.83[EUR][1000 genomes]
rs61926275	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6580761	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs7134976	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7138604	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs7305375	1.00[CEU][hapmap]
rs7307419	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7316864	0.86[CEU][hapmap]
rs7956591	1.00[CEU][hapmap];0.85[CHB][hapmap];0.84[EUR][1000 genomes]
rs876078	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs876079	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs876080	0.90[CEU][hapmap]
rs952318	1.00[CEU][hapmap];0.94[YRI][hapmap];0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9788159	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10506295	DIP2B	cis	Thyroid	GTEx

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053000-51086200	Weak transcription	Psoas Muscle	Psoas
5	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
10	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
12	chr12:51062600-51091800	Strong transcription	Liver	Liver
13	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
15	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:51063800-51085600	Strong transcription	Primary T cells from cord blood	blood
17	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
18	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
24	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
25	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
26	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
27	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
28	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:51071000-51089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr12:51072000-51089000	Weak transcription	NHDF-Ad	bronchial
32	chr12:51072200-51089200	Weak transcription	Fetal Brain Male	brain
33	chr12:51073000-51090600	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr12:51074200-51087800	Strong transcription	Fetal Intestine Large	intestine
35	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr12:51076600-51102600	Strong transcription	Adipose Nuclei	Adipose
40	chr12:51077000-51088600	Strong transcription	Fetal Intestine Small	intestine
41	chr12:51078600-51087600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr12:51079200-51094800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr12:51079200-51094800	Strong transcription	Dnd41	blood
44	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:51079400-51095200	Strong transcription	Fetal Muscle Leg	muscle
46	chr12:51079600-51094800	Strong transcription	Primary hematopoietic stem cells	blood
47	chr12:51079800-51089200	Weak transcription	HUVEC	blood vessel
48	chr12:51080200-51086600	Weak transcription	HMEC	breast
49	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr12:51080600-51087800	Weak transcription	Aorta	Aorta

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