Variant report

Variant	rs10506296
Chromosome Location	chr12:51087857-51087858
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51080928..51083785-chr12:51087182..51088712,2	MCF-7	breast:

Extended variants
information (count: 92 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:92)

rs_ID	r²[population]
rs10735827	0.84[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10747592	0.84[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10783368	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs10783388	0.92[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs10783390	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap]
rs10876048	0.86[EUR][1000 genomes]
rs10876054	0.86[EUR][1000 genomes]
rs10876082	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876083	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10876085	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876088	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10876091	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169551	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.89[ASN][1000 genomes]
rs11169553	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11169556	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12099615	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12296379	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.90[EUR][1000 genomes]
rs12320201	0.86[EUR][1000 genomes]
rs13328926	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1402693	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1521515	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1521517	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1561422	0.84[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs17124888	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[GIH][hapmap];0.88[LWK][hapmap];0.86[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17124907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1815010	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1996750	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2246840	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2252595	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2684886	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684890	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684891	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2684902	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2684906	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2700486	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28414775	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28479152	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2947617	0.85[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs3803181	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3825401	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4129355	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4132432	0.85[MEX][hapmap];0.82[AMR][1000 genomes]
rs4143663	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4306347	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4517607	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4562889	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4768887	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs4768909	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4768915	0.85[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4768920	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56753963	0.90[EUR][1000 genomes]
rs56818625	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57328764	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57512759	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58301497	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58943330	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs59194948	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59284993	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59683461	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60239257	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60494920	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs60908906	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61926300	0.82[ASN][1000 genomes]
rs6580766	1.00[CEU][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580767	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580768	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580770	1.00[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7131993	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7132443	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7135222	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7301125	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7302749	0.86[EUR][1000 genomes]
rs7303202	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7304793	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7306387	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7308872	0.98[ASN][1000 genomes]
rs7310507	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7487150	0.81[ASN][1000 genomes]
rs7487645	1.00[ASW][hapmap];1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.95[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7953880	1.00[ASW][hapmap];1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7955310	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs7959129	1.00[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7964642	0.81[ASN][1000 genomes]
rs7969251	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7978443	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7979184	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7979474	1.00[CEU][hapmap];0.89[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs829125	1.00[CEU][hapmap];0.89[CHB][hapmap];0.85[CHD][hapmap];0.95[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs865490	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs939631	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs951591	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9634264	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap];0.83[MEX][hapmap];1.00[TSI][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51028400-51092400	Weak transcription	Gastric	stomach
2	chr12:51041800-51091400	Weak transcription	Pancreas	Pancrea
3	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:51053200-51092400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr12:51053800-51089200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr12:51057000-51089600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr12:51058600-51089000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:51059400-51089600	Weak transcription	Small Intestine	intestine
9	chr12:51060000-51101200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
11	chr12:51062600-51091800	Strong transcription	Liver	Liver
12	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
16	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr12:51064800-51090000	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:51064800-51095800	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr12:51068200-51095200	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
25	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
26	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr12:51068400-51095000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr12:51071000-51089400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr12:51072000-51089000	Weak transcription	NHDF-Ad	bronchial
30	chr12:51072200-51089200	Weak transcription	Fetal Brain Male	brain
31	chr12:51073000-51090600	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
35	chr12:51075200-51098800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr12:51076600-51102600	Strong transcription	Adipose Nuclei	Adipose
37	chr12:51077000-51088600	Strong transcription	Fetal Intestine Small	intestine
38	chr12:51079200-51094800	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr12:51079200-51094800	Strong transcription	Dnd41	blood
40	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr12:51079400-51095200	Strong transcription	Fetal Muscle Leg	muscle
42	chr12:51079600-51094800	Strong transcription	Primary hematopoietic stem cells	blood
43	chr12:51079800-51089200	Weak transcription	HUVEC	blood vessel
44	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr12:51080600-51089200	Weak transcription	NHLF	lung
46	chr12:51080800-51089200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr12:51081200-51089000	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr12:51081200-51089000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
49	chr12:51081400-51089000	Weak transcription	NH-A	brain
50	chr12:51082400-51090000	Weak transcription	Fetal Kidney	kidney

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links