Variant report

Variant	rs10507545
Chromosome Location	chr13:47482083-47482084
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17069137	0.85[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17289304	0.93[GIH][hapmap]
rs17359763	0.86[GIH][hapmap]
rs2016711	1.00[CEU][hapmap];0.93[GIH][hapmap]
rs56238195	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs60370834	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6310	0.87[CEU][hapmap]
rs6312	0.87[CEU][hapmap]
rs659734	1.00[CEU][hapmap]
rs7323079	0.86[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2763019	chr13:47348229-48123447	Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:47478200-47482400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:47478200-47483200	Weak transcription	NH-A	brain
3	chr13:47478400-47482400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:47478600-47482600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr13:47478600-47483600	Weak transcription	Osteobl	bone
6	chr13:47478800-47483000	Weak transcription	HMEC	breast
7	chr13:47479800-47482400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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