Variant report

Variant	rs10507573
Chromosome Location	chr13:53549342-53549343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12583997	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12584636	0.87[AMR][1000 genomes]
rs12586102	1.00[EUR][1000 genomes]
rs17053235	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55724041	1.00[EUR][1000 genomes]
rs74088744	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74088759	1.00[EUR][1000 genomes]
rs74088762	1.00[EUR][1000 genomes]
rs74088763	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv832613	chr13:53524319-53687188	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53539200-53553200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr13:53544800-53551200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr13:53548600-53549600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:53549000-53550200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
5	chr13:53549000-53550400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr13:53549000-53550400	Enhancers	Brain Germinal Matrix	brain
7	chr13:53549000-53550800	Enhancers	Fetal Brain Male	brain
8	chr13:53549200-53549800	Enhancers	Fetal Muscle Leg	muscle
9	chr13:53549200-53550200	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr13:53549200-53551400	Enhancers	Fetal Brain Female	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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