Variant report
Variant | rs10507835 |
---|---|
Chromosome Location | chr13:76455681-76455682 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs1015694 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
rs1036867 | 0.87[ASN][1000 genomes] |
rs1036868 | 0.87[ASN][1000 genomes] |
rs1323565 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1323566 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1323567 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1323568 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs1397 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1399 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs1400 | 0.81[JPT][hapmap] |
rs1550620 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];0.85[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs2120066 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs4572275 | 0.83[CHB][hapmap];0.80[JPT][hapmap] |
rs4884024 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
rs4885358 | 1.00[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs4885362 | 0.87[ASN][1000 genomes] |
rs6562923 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs7981821 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs7986419 | 0.86[ASN][1000 genomes] |
rs7986876 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs9318381 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs9530475 | 0.93[CHB][hapmap];0.81[JPT][hapmap];0.84[ASN][1000 genomes] |
rs9530477 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs9530483 | 0.87[ASN][1000 genomes] |
rs9530484 | 0.87[ASN][1000 genomes] |
rs9544060 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |
rs9544071 | 0.87[ASN][1000 genomes] |
rs9600572 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes] |
rs9600574 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9600575 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9600577 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes] |
rs9600578 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs9600579 | 0.83[CHB][hapmap];0.81[JPT][hapmap] |
rs9600581 | 0.87[ASN][1000 genomes] |
rs9600582 | 0.87[ASN][1000 genomes] |
rs969394 | 1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv832646 | chr13:76300428-76483102 | Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 8 gene(s) | inside rSNPs | diseases |
2 | esv2758333 | chr13:76321610-76542003 | Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
3 | esv2759950 | chr13:76321610-76542003 | Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
4 | nsv832649 | chr13:76424872-76657891 | Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:76440000-76469200 | Weak transcription | HSMM | muscle |
2 | chr13:76451800-76463600 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
3 | chr13:76455200-76456000 | Enhancers | Liver | Liver |