Variant report

Variant	rs10507836
Chromosome Location	chr13:76456501-76456502
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10507837	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10507838	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12869260	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1318553	0.95[EUR][1000 genomes]
rs17065177	0.98[EUR][1000 genomes]
rs17657837	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17713028	0.88[EUR][1000 genomes]
rs17714871	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34440314	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34674775	0.95[EUR][1000 genomes]
rs34832254	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34897927	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34902046	0.95[EUR][1000 genomes]
rs34959967	0.95[EUR][1000 genomes]
rs34973043	0.95[EUR][1000 genomes]
rs35254061	0.91[EUR][1000 genomes]
rs617686	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs625033	1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[TSI][hapmap];0.89[EUR][1000 genomes]
rs71434812	0.95[EUR][1000 genomes]
rs71434813	0.96[EUR][1000 genomes]
rs71434814	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71434815	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs727020	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7988661	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7988841	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7991366	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7993408	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes]
rs7997504	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs7997894	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600584	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600585	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9600586	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832646	chr13:76300428-76483102	Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	esv2758333	chr13:76321610-76542003	Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	esv2759950	chr13:76321610-76542003	Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv832649	chr13:76424872-76657891	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10507836	LMO7	cis	parietal	SCAN
rs10507836	TBC1D4	cis	lymphoblastoid	seeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:76440000-76469200	Weak transcription	HSMM	muscle
2	chr13:76451800-76463600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:76456200-76456600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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