Variant report

Variant	rs10508692
Chromosome Location	chr10:25637270-25637271
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:25606928..25608702-chr10:25636326..25639003,2	MCF-7	breast:

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1413400	0.83[ASN][1000 genomes]
rs1416993	0.83[ASN][1000 genomes]
rs1416994	0.83[ASN][1000 genomes]
rs16925561	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1931291	0.89[JPT][hapmap]
rs2009148	0.89[JPT][hapmap]
rs2225259	0.89[JPT][hapmap]
rs2480345	0.88[JPT][hapmap]
rs2483702	0.88[JPT][hapmap]
rs4749023	0.88[JPT][hapmap]
rs55801305	0.83[ASN][1000 genomes]
rs56084254	0.86[ASN][1000 genomes]
rs56257605	0.86[ASN][1000 genomes]
rs56982575	0.80[AFR][1000 genomes]
rs58180203	0.80[AFR][1000 genomes]
rs58585465	0.83[ASN][1000 genomes]
rs58857830	0.80[AFR][1000 genomes]
rs58942965	0.83[ASN][1000 genomes]
rs58968345	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59521850	0.83[ASN][1000 genomes]
rs60268096	0.83[ASN][1000 genomes]
rs60352386	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60876342	0.91[ASN][1000 genomes]
rs61082972	0.83[ASN][1000 genomes]
rs61105987	0.86[ASN][1000 genomes]
rs61108946	0.83[ASN][1000 genomes]
rs61271645	0.91[ASN][1000 genomes]
rs61530525	0.83[ASN][1000 genomes]
rs66463292	0.83[ASN][1000 genomes]
rs66539540	0.83[ASN][1000 genomes]
rs66810403	0.83[ASN][1000 genomes]
rs66924755	0.86[ASN][1000 genomes]
rs66963587	0.83[ASN][1000 genomes]
rs67069034	0.83[ASN][1000 genomes]
rs67389824	0.83[ASN][1000 genomes]
rs67675896	0.83[ASN][1000 genomes]
rs67709672	0.88[ASN][1000 genomes]
rs67733590	0.83[ASN][1000 genomes]
rs67963266	0.86[ASN][1000 genomes]
rs67969515	0.86[ASN][1000 genomes]
rs68159928	0.83[ASN][1000 genomes]
rs7093650	0.83[ASN][1000 genomes]
rs7093651	0.83[ASN][1000 genomes]
rs7093692	0.83[ASN][1000 genomes]
rs72792092	0.83[ASN][1000 genomes]
rs73608266	0.83[ASN][1000 genomes]
rs74123863	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs74123865	0.80[AFR][1000 genomes]
rs74123866	0.96[AFR][1000 genomes]
rs74123867	0.96[AFR][1000 genomes]
rs74126521	0.85[ASN][1000 genomes]
rs7476751	0.83[ASN][1000 genomes]
rs7900231	1.00[CHB][hapmap]
rs7904501	0.83[ASN][1000 genomes]
rs7918180	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs824600	0.88[JPT][hapmap]
rs959751	0.88[JPT][hapmap]
rs959752	0.89[JPT][hapmap]
rs9663151	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761583	chr10:25525657-25722444	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv3349863	chr10:25614571-25946379	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv3371273	chr10:25636346-25640744	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25632400-25642600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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