Variant report

Variant	rs10510536
Chromosome Location	chr3:23269770-23269771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:23267196..23270682-chr3:23275861..23279079,3	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11921580	0.88[YRI][hapmap]
rs11926494	0.94[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11927173	0.93[ASN][1000 genomes]
rs12185989	0.89[YRI][hapmap]
rs13094957	0.84[CHB][hapmap]
rs13314285	0.83[ASN][1000 genomes]
rs1495130	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1496653	0.95[CHB][hapmap];0.83[CHD][hapmap]
rs17012800	1.00[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs17012829	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1908475	0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs2017065	1.00[CEU][hapmap];0.90[CHB][hapmap];0.83[CHD][hapmap];0.82[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap];0.87[ASN][1000 genomes]
rs2173058	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs2359765	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2359766	1.00[CEU][hapmap];0.90[CHB][hapmap]
rs4327332	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56223303	0.81[ASN][1000 genomes]
rs57131555	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs58724157	0.92[ASN][1000 genomes]
rs60782093	0.93[ASN][1000 genomes]
rs61578857	0.93[ASN][1000 genomes]
rs6765801	0.91[ASN][1000 genomes]
rs6769167	0.87[ASN][1000 genomes]
rs6771206	0.85[LWK][hapmap];0.93[YRI][hapmap]
rs6792370	0.95[CHB][hapmap];0.96[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs73823472	0.81[ASN][1000 genomes]
rs7612463	0.89[CEU][hapmap];0.89[CHB][hapmap];0.91[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7612812	0.81[AMR][1000 genomes]
rs7613185	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs7627380	1.00[CEU][hapmap];0.90[CHB][hapmap];0.96[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7627525	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[CHD][hapmap];0.83[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs7628372	1.00[CEU][hapmap];0.95[CHB][hapmap]
rs7651175	0.88[YRI][hapmap]
rs9831921	0.83[ASN][1000 genomes]
rs9866739	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9867046	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834636	chr3:23138653-23301443	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1014701	chr3:23257658-23416094	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10510536	RPL15	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:23246400-23273400	Weak transcription	Aorta	Aorta
2	chr3:23249000-23273400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr3:23260800-23270400	Weak transcription	Psoas Muscle	Psoas
4	chr3:23260800-23273400	Weak transcription	Right Atrium	heart
5	chr3:23261000-23273400	Weak transcription	Ovary	ovary
6	chr3:23261000-23274400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:23261200-23272600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr3:23261400-23278200	Weak transcription	Brain Angular Gyrus	brain
9	chr3:23265400-23282000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:23266200-23277800	Weak transcription	Fetal Thymus	thymus
11	chr3:23267600-23274400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:23269400-23270200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr3:23269400-23270200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr3:23269400-23273000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:23269400-23273200	Weak transcription	Brain Substantia Nigra	brain
16	chr3:23269400-23274200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr3:23269600-23271600	Weak transcription	Primary B cells from peripheral blood	blood

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