Variant report

Variant	rs10510750
Chromosome Location	chr3:46274886-46274887
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:46266350..46268265-chr3:46273199..46276182,2	K562	blood:

Extended variants
information (count: 178 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:176)

rs_ID	r²[population]
rs11575062	0.82[EUR][1000 genomes]
rs11919884	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11919943	0.87[CEU][hapmap]
rs11926063	1.00[CEU][hapmap]
rs13060713	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13060802	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13065351	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13067058	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13068145	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13068271	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13069467	1.00[AFR][1000 genomes]
rs13069750	1.00[AFR][1000 genomes]
rs13069845	1.00[AFR][1000 genomes]
rs13070099	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13071469	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13073976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075270	1.00[CEU][hapmap]
rs13075836	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes]
rs13077302	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13078564	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13080757	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13080979	1.00[AFR][1000 genomes]
rs13083881	1.00[AFR][1000 genomes]
rs13088766	1.00[CEU][hapmap]
rs13092160	1.00[CEU][hapmap]
rs13093063	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13095940	1.00[AFR][1000 genomes]
rs13095946	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13096307	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13096325	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes]
rs13096371	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs13096808	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13096873	1.00[AFR][1000 genomes]
rs13096905	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13097340	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes]
rs13097666	1.00[AFR][1000 genomes]
rs13098911	1.00[AFR][1000 genomes]
rs13100243	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1542755	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1542756	0.84[EUR][1000 genomes]
rs17216717	1.00[AFR][1000 genomes]
rs17217831	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17282797	1.00[AFR][1000 genomes]
rs17282922	1.00[AFR][1000 genomes]
rs17283712	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17284138	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17284187	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1894387	0.82[EUR][1000 genomes]
rs1894388	0.82[EUR][1000 genomes]
rs2131092	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2373156	1.00[CEU][hapmap]
rs2856762	0.87[CEU][hapmap];0.82[CHB][hapmap]
rs28677778	0.85[EUR][1000 genomes]
rs3091310	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3091314	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[AFR][1000 genomes]
rs3092957	0.82[EUR][1000 genomes]
rs3092958	0.82[EUR][1000 genomes]
rs3092959	0.82[EUR][1000 genomes]
rs3136667	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs3176825	1.00[CEU][hapmap]
rs3176826	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs3181076	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs3181078	1.00[AFR][1000 genomes]
rs3181080	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs33998492	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34005848	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34024447	0.82[EUR][1000 genomes]
rs34041956	0.82[EUR][1000 genomes]
rs34047458	1.00[AFR][1000 genomes]
rs34073838	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34079287	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34101673	1.00[AFR][1000 genomes]
rs34106161	0.82[EUR][1000 genomes]
rs34134191	1.00[AFR][1000 genomes]
rs34180919	0.85[EUR][1000 genomes]
rs34194160	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34272024	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34280313	1.00[AFR][1000 genomes]
rs34289272	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34340501	1.00[AFR][1000 genomes]
rs34351442	0.85[EUR][1000 genomes]
rs34363105	0.82[EUR][1000 genomes]
rs34378541	1.00[AFR][1000 genomes]
rs34406035	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34409248	1.00[AFR][1000 genomes]
rs34414382	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34423195	1.00[AFR][1000 genomes]
rs34448949	0.82[EUR][1000 genomes]
rs34473395	0.82[EUR][1000 genomes]
rs34523728	1.00[AFR][1000 genomes]
rs34531115	1.00[AFR][1000 genomes]
rs34558763	1.00[AFR][1000 genomes]
rs34567015	1.00[AFR][1000 genomes]
rs34570200	1.00[AFR][1000 genomes]
rs34578126	0.83[EUR][1000 genomes]
rs34625088	1.00[AFR][1000 genomes]
rs34677490	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34692251	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34693386	1.00[AFR][1000 genomes]
rs34709208	0.82[EUR][1000 genomes]
rs34745455	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs34865316	1.00[AFR][1000 genomes]
rs34897745	1.00[AFR][1000 genomes]
rs34919616	1.00[AFR][1000 genomes]
rs34988015	0.85[EUR][1000 genomes]
rs34996127	1.00[AFR][1000 genomes]
rs35035328	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35117954	0.87[EUR][1000 genomes]
rs35148665	0.85[EUR][1000 genomes]
rs35178150	1.00[AFR][1000 genomes]
rs35203745	0.85[EUR][1000 genomes]
rs35218998	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35288652	1.00[AFR][1000 genomes]
rs35335084	1.00[AFR][1000 genomes]
rs35354367	1.00[AFR][1000 genomes]
rs35367413	0.82[EUR][1000 genomes]
rs35373513	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35413141	0.82[EUR][1000 genomes]
rs35429781	1.00[AFR][1000 genomes]
rs35434266	1.00[AFR][1000 genomes]
rs35438577	0.82[EUR][1000 genomes]
rs35511592	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35560301	1.00[AFR][1000 genomes]
rs35566550	1.00[AFR][1000 genomes]
rs35577626	0.85[EUR][1000 genomes]
rs35587265	1.00[AFR][1000 genomes]
rs35601704	0.82[EUR][1000 genomes]
rs35613615	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35614049	1.00[AFR][1000 genomes]
rs35617677	1.00[AFR][1000 genomes]
rs35646896	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35685805	1.00[AFR][1000 genomes]
rs35775079	1.00[AFR][1000 genomes]
rs35853141	1.00[AFR][1000 genomes]
rs35919278	1.00[AFR][1000 genomes]
rs35942803	1.00[AFR][1000 genomes]
rs36010446	1.00[AFR][1000 genomes]
rs36048333	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36052732	0.82[EUR][1000 genomes]
rs36078103	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3749461	0.82[EUR][1000 genomes]
rs3918354	0.82[EUR][1000 genomes]
rs3918362	0.82[EUR][1000 genomes]
rs3918365	0.82[EUR][1000 genomes]
rs3918368	0.82[EUR][1000 genomes]
rs4473594	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4987053	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6775046	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs6793370	0.85[EUR][1000 genomes]
rs71327038	1.00[AFR][1000 genomes]
rs71327039	1.00[AFR][1000 genomes]
rs71327040	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs71327041	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71327042	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71327047	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs71327048	0.85[EUR][1000 genomes]
rs71327053	0.80[EUR][1000 genomes]
rs71327054	0.82[EUR][1000 genomes]
rs71327055	0.82[EUR][1000 genomes]
rs71327056	0.82[EUR][1000 genomes]
rs71327057	0.82[EUR][1000 genomes]
rs71615441	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs71615445	0.82[EUR][1000 genomes]
rs71622511	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7620586	1.00[CEU][hapmap];0.82[CHB][hapmap]
rs7624155	1.00[CEU][hapmap]
rs7628489	1.00[CEU][hapmap]
rs7631551	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7649905	0.85[EUR][1000 genomes]
rs7651539	1.00[CEU][hapmap]
rs916092	0.82[CHB][hapmap]
rs9810242	0.85[EUR][1000 genomes]
rs9832730	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9838191	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9872023	0.87[EUR][1000 genomes]
rs9882616	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:46264400-46276400	Weak transcription	Fetal Thymus	thymus
2	chr3:46265600-46276400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr3:46271200-46277600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:46273800-46278600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr3:46274000-46275600	Enhancers	Spleen	Spleen
6	chr3:46274200-46277800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:46274600-46275000	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr3:46274600-46275400	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr3:46274600-46275600	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr3:46274800-46277000	Weak transcription	Primary hematopoietic stem cells	blood

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