Variant report

Variant	rs10511959
Chromosome Location	chr9:71210894-71210895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:71208704..71211191-chr9:71318423..71320358,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs13284137	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288798	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13288885	1.00[ASN][1000 genomes]
rs13290124	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13296119	1.00[ASN][1000 genomes]
rs13297946	1.00[ASN][1000 genomes]
rs17479202	1.00[ASN][1000 genomes]
rs34054758	1.00[ASN][1000 genomes]
rs34206324	1.00[ASN][1000 genomes]
rs34267520	1.00[ASN][1000 genomes]
rs34344868	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34377966	1.00[ASN][1000 genomes]
rs34412731	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34436601	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34532945	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34763246	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35029924	1.00[ASN][1000 genomes]
rs35551873	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35596772	1.00[ASN][1000 genomes]
rs35666199	1.00[ASN][1000 genomes]
rs6560237	1.00[ASN][1000 genomes]
rs7045561	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048633	1.00[ASN][1000 genomes]
rs71501771	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71503634	1.00[ASN][1000 genomes]
rs772	1.00[ASN][1000 genomes]
rs7858883	1.00[ASN][1000 genomes]
rs7859065	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv482506	chr9:71130848-71280888	Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv466392	chr9:71130848-71318817	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv614546	chr9:71130848-71318817	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1026962	chr9:71130848-71357605	Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1032210	chr9:71130848-71511987	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
6	nsv893414	chr9:71139378-71320732	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71208200-71213800	Enhancers	Primary B cells from peripheral blood	blood
2	chr9:71209400-71211800	Weak transcription	Primary B cells from cord blood	blood
3	chr9:71210800-71211200	Enhancers	H1 Cell Line	embryonic stem cell
4	chr9:71210800-71211200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:71210800-71211400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr9:71210800-71211400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:71210800-71211400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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