Variant report

Variant	rs10513216
Chromosome Location	chr3:143400873-143400874
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10935500	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1242054	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs1242057	0.87[ASN][1000 genomes]
rs12629688	0.92[JPT][hapmap]
rs13059265	0.91[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1345170	0.84[JPT][hapmap];0.85[ASN][1000 genomes]
rs1447741	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs16853999	0.92[JPT][hapmap];0.87[ASN][1000 genomes]
rs16854008	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs1868174	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1868175	0.91[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1868177	0.98[ASN][1000 genomes]
rs2121777	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4839649	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs4839650	0.81[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs4839651	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs57630925	0.87[ASN][1000 genomes]
rs57917966	0.87[ASN][1000 genomes]
rs58441250	0.87[ASN][1000 genomes]
rs58652978	0.87[ASN][1000 genomes]
rs60098452	0.87[ASN][1000 genomes]
rs60428559	0.85[ASN][1000 genomes]
rs60633318	0.87[ASN][1000 genomes]
rs60891486	0.98[ASN][1000 genomes]
rs61645302	0.87[ASN][1000 genomes]
rs62269851	0.85[ASN][1000 genomes]
rs62269855	0.87[ASN][1000 genomes]
rs62269856	0.87[ASN][1000 genomes]
rs62270560	0.87[ASN][1000 genomes]
rs6440181	1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs6782154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6803893	0.83[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7629784	0.87[ASN][1000 genomes]
rs7629855	0.87[ASN][1000 genomes]
rs7650371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650396	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs935519	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs935520	0.92[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs9831286	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9844600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9882472	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949288	chr3:142793323-143585882	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv829745	chr3:143278512-143405626	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877566	chr3:143397740-143421221	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:143370800-143420800	Weak transcription	Primary T cells from cord blood	blood
2	chr3:143391400-143402800	Weak transcription	Brain Hippocampus Middle	brain
3	chr3:143394200-143470200	Weak transcription	Primary B cells from cord blood	blood
4	chr3:143396000-143408400	Weak transcription	Aorta	Aorta
5	chr3:143396600-143403400	Weak transcription	Fetal Lung	lung
6	chr3:143400400-143401200	Enhancers	HSMM	muscle
7	chr3:143400600-143401000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:143400600-143401000	Enhancers	HMEC	breast
9	chr3:143400600-143401200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr3:143400600-143401200	Enhancers	HSMMtube	muscle

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