Variant report

Variant	rs10516750
Chromosome Location	chr4:86484931-86484932
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:79)

rs_ID	r²[population]
rs10013096	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10026950	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10516749	0.82[JPT][hapmap]
rs11931565	0.82[JPT][hapmap]
rs11932352	0.82[JPT][hapmap]
rs11936036	0.82[JPT][hapmap]
rs13114627	0.97[EUR][1000 genomes]
rs13115058	0.97[EUR][1000 genomes]
rs1481772	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1481773	0.97[EUR][1000 genomes]
rs1481782	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs1481783	0.97[EUR][1000 genomes]
rs1548105	0.97[EUR][1000 genomes]
rs1548106	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes]
rs1548108	0.97[EUR][1000 genomes]
rs17010337	0.85[YRI][hapmap]
rs17010356	1.00[JPT][hapmap]
rs17010393	0.82[JPT][hapmap]
rs17010402	0.82[JPT][hapmap]
rs17010406	0.82[JPT][hapmap]
rs17010470	0.90[YRI][hapmap]
rs1905033	0.82[JPT][hapmap]
rs1982699	0.82[JPT][hapmap]
rs1994070	0.82[JPT][hapmap]
rs1994073	0.82[JPT][hapmap]
rs2086533	0.94[EUR][1000 genomes]
rs2086535	0.97[EUR][1000 genomes]
rs2101117	0.94[EUR][1000 genomes]
rs2101118	0.94[EUR][1000 genomes]
rs2101119	0.91[EUR][1000 genomes]
rs2101120	1.00[CEU][hapmap];0.82[JPT][hapmap];0.94[EUR][1000 genomes]
rs2128091	0.97[EUR][1000 genomes]
rs2128093	0.97[EUR][1000 genomes]
rs2128096	0.82[JPT][hapmap]
rs2200049	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs2200050	0.97[EUR][1000 genomes]
rs2869351	1.00[JPT][hapmap]
rs2869353	0.94[EUR][1000 genomes]
rs2869354	0.94[EUR][1000 genomes]
rs2869356	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs2869359	0.82[JPT][hapmap]
rs3960322	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes]
rs4327478	0.82[JPT][hapmap]
rs4348085	0.82[JPT][hapmap]
rs4450923	0.82[JPT][hapmap]
rs4450924	0.82[JPT][hapmap]
rs4450925	0.82[JPT][hapmap]
rs4466034	0.97[EUR][1000 genomes]
rs4467559	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4525966	0.82[JPT][hapmap]
rs4535330	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4693116	0.97[EUR][1000 genomes]
rs4693706	1.00[CEU][hapmap];0.82[JPT][hapmap];0.97[EUR][1000 genomes]
rs4693707	0.97[EUR][1000 genomes]
rs60617061	0.94[AFR][1000 genomes]
rs6531826	0.82[JPT][hapmap]
rs6531828	0.82[JPT][hapmap]
rs6828628	0.82[JPT][hapmap]
rs6829120	0.82[JPT][hapmap]
rs6829628	0.82[JPT][hapmap]
rs6841899	0.82[JPT][hapmap]
rs6851965	0.90[YRI][hapmap]
rs6854573	0.91[YRI][hapmap]
rs72654089	0.92[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs72654093	1.00[EUR][1000 genomes]
rs73835213	0.95[AFR][1000 genomes]
rs7685458	0.82[JPT][hapmap]
rs7685580	0.82[JPT][hapmap];0.90[YRI][hapmap]
rs9307004	0.97[EUR][1000 genomes]
rs9307005	0.97[EUR][1000 genomes]
rs931179	0.92[EUR][1000 genomes]
rs931180	0.97[EUR][1000 genomes]
rs964836	0.97[EUR][1000 genomes]
rs971422	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs971423	0.91[EUR][1000 genomes]
rs971424	0.91[EUR][1000 genomes]
rs971425	0.97[EUR][1000 genomes]
rs971426	0.94[EUR][1000 genomes]
rs9999410	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86475600-86488000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:86476800-86491800	Weak transcription	NHDF-Ad	bronchial
3	chr4:86477000-86493000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:86477200-86487200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr4:86477600-86486400	Weak transcription	HSMM	muscle
6	chr4:86477600-86494600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:86478000-86501000	Weak transcription	Right Ventricle	heart
8	chr4:86479000-86486600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr4:86479000-86493800	Weak transcription	Spleen	Spleen
10	chr4:86479400-86488600	Weak transcription	Psoas Muscle	Psoas
11	chr4:86482200-86491600	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr4:86482400-86485200	Genic enhancers	Primary B cells from peripheral blood	blood
13	chr4:86484800-86486600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr4:86484800-86486800	Weak transcription	Primary B cells from cord blood	blood
15	chr4:86484800-86489800	Enhancers	Primary neutrophils fromperipheralblood	blood
16	chr4:86484800-86491600	Weak transcription	Fetal Muscle Leg	muscle

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