Variant report

Variant	rs10516754
Chromosome Location	chr4:86650763-86650764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10516753	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11931466	1.00[AMR][1000 genomes]
rs1482082	1.00[AMR][1000 genomes]
rs17010594	1.00[AMR][1000 genomes]
rs17010650	1.00[AMR][1000 genomes]
rs17010773	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17010775	1.00[AMR][1000 genomes]
rs17010777	1.00[AMR][1000 genomes]
rs1994082	1.00[AMR][1000 genomes]
rs6823467	1.00[AMR][1000 genomes]
rs6841314	1.00[AMR][1000 genomes]
rs6851145	1.00[AMR][1000 genomes]
rs72972865	1.00[AMR][1000 genomes]
rs72972875	1.00[AMR][1000 genomes]
rs7656548	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7684018	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7695679	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv829999	chr4:86500257-86666019	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86647000-86653200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr4:86647000-86655400	Weak transcription	Brain Angular Gyrus	brain
3	chr4:86647200-86653200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:86647200-86658200	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:86647400-86652400	Weak transcription	Stomach Mucosa	stomach
6	chr4:86647400-86653200	Weak transcription	Fetal Heart	heart
7	chr4:86647600-86652000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr4:86647600-86653400	Weak transcription	Fetal Lung	lung
9	chr4:86647800-86651000	Weak transcription	Brain Hippocampus Middle	brain
10	chr4:86647800-86653200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:86647800-86654600	Weak transcription	Colon Smooth Muscle	Colon
12	chr4:86647800-86655600	Weak transcription	Small Intestine	intestine
13	chr4:86647800-86656600	Weak transcription	Brain Anterior Caudate	brain
14	chr4:86647800-86656600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr4:86647800-86662600	Weak transcription	Left Ventricle	heart
16	chr4:86647800-86662600	Weak transcription	Spleen	Spleen
17	chr4:86648000-86652800	Weak transcription	GM12878-XiMat	blood
18	chr4:86648000-86654800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr4:86648000-86655200	Weak transcription	Primary hematopoietic stem cells	blood
20	chr4:86648200-86654600	Weak transcription	Primary B cells from cord blood	blood
21	chr4:86648400-86662600	Weak transcription	Pancreas	Pancrea
22	chr4:86649000-86652400	Weak transcription	Primary B cells from peripheral blood	blood
23	chr4:86649000-86654800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr4:86649000-86655200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr4:86649400-86650800	Enhancers	Fetal Kidney	kidney
26	chr4:86649400-86651200	Enhancers	HSMM	muscle
27	chr4:86649800-86650800	Enhancers	Muscle Satellite Cultured Cells	--
28	chr4:86649800-86650800	Enhancers	HSMMtube	muscle
29	chr4:86650200-86651400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr4:86650200-86653200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:86650200-86653200	Weak transcription	NHDF-Ad	bronchial
32	chr4:86650200-86655200	Weak transcription	Primary neutrophils fromperipheralblood	blood
33	chr4:86650400-86662400	Weak transcription	Adipose Nuclei	Adipose
34	chr4:86650600-86650800	Enhancers	Right Atrium	heart
35	chr4:86650600-86651800	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links