Variant report

Variant	rs10516758
Chromosome Location	chr4:86706902-86706903
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86699451..86703287-chr4:86705841..86708546,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138639	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10516759	1.00[ASN][1000 genomes]
rs10516760	1.00[ASN][1000 genomes]
rs10516761	1.00[ASN][1000 genomes]
rs10516762	1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	1.00[ASN][1000 genomes]
rs17395020	1.00[ASN][1000 genomes]
rs17395132	1.00[ASN][1000 genomes]
rs17395223	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.90[TSI][hapmap];1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17399123	1.00[ASN][1000 genomes]
rs17399707	1.00[ASW][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17399908	1.00[ASN][1000 genomes]
rs17400185	1.00[ASN][1000 genomes]
rs17410566	0.88[CEU][hapmap]
rs2089763	1.00[ASN][1000 genomes]
rs2601870	1.00[ASN][1000 genomes]
rs3114384	1.00[ASN][1000 genomes]
rs343847	1.00[ASN][1000 genomes]
rs345330	1.00[ASN][1000 genomes]
rs345334	1.00[ASN][1000 genomes]
rs345340	1.00[ASN][1000 genomes]
rs345355	1.00[ASN][1000 genomes]
rs345359	1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs71599428	1.00[ASN][1000 genomes]
rs745892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv470048	chr4:85998783-86720838	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
4	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
5	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3465621	chr4:86704703-86707567	Weak transcription Enhancers Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv3465618	chr4:86704769-86707507	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3465622	chr4:86704769-86707507	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86695400-86708200	Weak transcription	Pancreas	Pancrea
2	chr4:86697200-86707800	Weak transcription	Spleen	Spleen
3	chr4:86701000-86708000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:86701000-86708000	Weak transcription	HMEC	breast
5	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
6	chr4:86701200-86708800	Weak transcription	Right Atrium	heart
7	chr4:86701200-86715600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr4:86701800-86708800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:86702200-86709800	Weak transcription	Fetal Kidney	kidney
10	chr4:86702200-86711200	Weak transcription	Fetal Lung	lung
11	chr4:86702400-86707000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr4:86704000-86715600	Enhancers	Osteobl	bone
13	chr4:86704000-86719800	Enhancers	NHDF-Ad	bronchial
14	chr4:86704400-86709800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr4:86704400-86710000	Enhancers	NHLF	lung
16	chr4:86705000-86712600	Weak transcription	Primary B cells from cord blood	blood
17	chr4:86705200-86709400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr4:86705400-86707200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:86705400-86707800	Weak transcription	Colon Smooth Muscle	Colon
20	chr4:86705400-86711200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:86705600-86707000	Enhancers	Small Intestine	intestine
22	chr4:86705600-86707800	Weak transcription	A549	lung
23	chr4:86705600-86708000	Weak transcription	NH-A	brain
24	chr4:86705800-86707800	Weak transcription	Aorta	Aorta
25	chr4:86705800-86708000	Enhancers	Muscle Satellite Cultured Cells	--
26	chr4:86705800-86708000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr4:86705800-86708800	Weak transcription	Esophagus	oesophagus
28	chr4:86705800-86710000	Weak transcription	Adipose Nuclei	Adipose
29	chr4:86705800-86710200	Weak transcription	Psoas Muscle	Psoas
30	chr4:86705800-86710800	Weak transcription	Fetal Stomach	stomach
31	chr4:86705800-86719600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr4:86706000-86707000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr4:86706000-86707800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr4:86706000-86708000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr4:86706000-86709000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:86706400-86707400	Weak transcription	HSMM	muscle
37	chr4:86706400-86707800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr4:86706400-86707800	Weak transcription	HSMMtube	muscle
39	chr4:86706400-86708200	Weak transcription	Primary B cells from peripheral blood	blood
40	chr4:86706400-86712800	Enhancers	HUVEC	blood vessel
41	chr4:86706600-86711800	Weak transcription	Stomach Smooth Muscle	stomach

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