Variant report

Variant	rs10516759
Chromosome Location	chr4:86725260-86725261
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:86721706..86723573-chr4:86724471..86726951,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10516758	1.00[ASN][1000 genomes]
rs10516760	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10516761	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10516762	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs13125320	1.00[ASN][1000 genomes]
rs1452681	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17395020	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17395132	1.00[ASN][1000 genomes]
rs17395223	1.00[ASN][1000 genomes]
rs17395916	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17399123	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17399707	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17399908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17400185	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2089763	1.00[ASN][1000 genomes]
rs2601851	1.00[CHB][hapmap]
rs2601870	1.00[ASN][1000 genomes]
rs3114384	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs343847	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345328	1.00[CHB][hapmap]
rs345330	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs345334	1.00[ASN][1000 genomes]
rs345340	1.00[ASN][1000 genomes]
rs345355	1.00[ASN][1000 genomes]
rs345359	1.00[ASN][1000 genomes]
rs55937611	1.00[ASN][1000 genomes]
rs56305839	1.00[ASN][1000 genomes]
rs71599426	1.00[ASN][1000 genomes]
rs71599428	1.00[ASN][1000 genomes]
rs745892	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461566	chr4:85988032-86725502	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv594747	chr4:85988032-86725502	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	esv3450999	chr4:86485840-86773745	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv879517	chr4:86677107-86739805	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:86701000-86728800	Weak transcription	Right Ventricle	heart
2	chr4:86709000-86727000	Weak transcription	HSMMtube	muscle
3	chr4:86709200-86727000	Weak transcription	HSMM	muscle
4	chr4:86713200-86726400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr4:86718200-86728400	Weak transcription	Left Ventricle	heart
6	chr4:86718200-86733800	Weak transcription	Gastric	stomach
7	chr4:86719000-86727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr4:86719400-86730800	Weak transcription	Primary B cells from cord blood	blood
9	chr4:86719600-86727200	Weak transcription	Adipose Nuclei	Adipose
10	chr4:86720400-86727200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:86721200-86726200	Weak transcription	HUVEC	blood vessel
12	chr4:86721800-86727000	Weak transcription	NHDF-Ad	bronchial
13	chr4:86722000-86731400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr4:86722200-86727000	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr4:86722200-86728600	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr4:86725000-86726600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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