The 2.0 version of rSNPBase
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Variant report
Variant
rs10518349
Chromosome Location
chr1:71251938-71251939
allele
C/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:3)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:3 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-CTH-1
chr1:71250869-71252151
ENSG00000229051
2
lnc-CTH-1
chr1:71250869-71252214
XLOC_000246
3
lnc-CTH-1
chr1:71250869-71252149
XLOC_000246
No data
No data
No data
Extended variants information (count: 5 )
Associated traits (count: 0)
rSNPs within LD-proxies of this variant (count:5)
rs_ID
r
2
[population]
rs12049445
0.83[EUR][1000 genomes]
rs12128044
0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1409983
0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs72932180
0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72932181
0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links