Variant report

Variant	rs10518533
Chromosome Location	chr4:129458258-129458259
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1603886	0.86[ASN][1000 genomes]
rs1603887	0.86[ASN][1000 genomes]
rs4975185	0.85[ASN][1000 genomes]
rs6534691	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6849290	0.89[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869258	chr4:129191619-130138148	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	79 gene(s)	inside rSNPs	diseases
2	nsv1017672	chr4:129450450-129603977	Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:129451000-129459600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr4:129451000-129461000	Weak transcription	A549	lung
3	chr4:129456600-129465000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr4:129456600-129467000	Weak transcription	Pancreas	Pancrea
5	chr4:129457200-129459600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr4:129457200-129459600	Weak transcription	Placenta	Placenta
7	chr4:129457400-129460200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr4:129457800-129459400	Enhancers	Fetal Heart	heart
9	chr4:129458000-129458400	Enhancers	Left Ventricle	heart
10	chr4:129458000-129458400	Enhancers	Right Atrium	heart
11	chr4:129458000-129459200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr4:129458200-129459600	Weak transcription	Esophagus	oesophagus
13	chr4:129458200-129464800	Weak transcription	Skeletal Muscle Female	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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