Variant report

Variant	rs10518698
Chromosome Location	chr15:53148946-53148947
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs16965171	0.81[CEU][hapmap]
rs16965179	0.81[CEU][hapmap]
rs1947042	0.92[AFR][1000 genomes]
rs2414183	0.89[EUR][1000 genomes]
rs2440356	0.85[ASN][1000 genomes]
rs2440358	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2440359	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2440369	0.85[AFR][1000 genomes]
rs28663272	0.80[ASN][1000 genomes]
rs2899501	0.81[CEU][hapmap]
rs62023508	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6493584	0.83[EUR][1000 genomes]
rs7164144	0.84[AFR][1000 genomes]
rs8025128	0.81[CEU][hapmap]
rs8025155	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471245	chr15:52607262-53187165	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10518698	ONECUT1	cis	cerebellum	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:53147000-53149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr15:53147600-53149200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr15:53148400-53151400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:53148600-53149200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:53148600-53151000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr15:53148800-53149200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:53148800-53149800	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr15:53148800-53149800	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr15:53148800-53149800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr15:53148800-53149800	Enhancers	iPS-20b Cell Line	embryonic stem cell
11	chr15:53148800-53150000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr15:53148800-53150600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr15:53148800-53150600	Enhancers	H9 Cell Line	embryonic stem cell
14	chr15:53148800-53151000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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