Variant report

Variant	rs10519662
Chromosome Location	chr4:143608086-143608087
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10002341	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13435036	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1373037	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1425526	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs17016533	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17016550	1.00[AMR][1000 genomes]
rs17016753	1.00[AMR][1000 genomes]
rs1838083	1.00[AMR][1000 genomes]
rs28497887	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59800331	1.00[AMR][1000 genomes]
rs73850509	0.81[AFR][1000 genomes]
rs73850568	1.00[AMR][1000 genomes]
rs7667002	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830101	chr4:143518810-143684392	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143585600-143613000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr4:143595400-143609000	Weak transcription	Aorta	Aorta
3	chr4:143607200-143612000	Enhancers	Fetal Heart	heart
4	chr4:143607600-143608200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr4:143607600-143611800	Weak transcription	Left Ventricle	heart
6	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr4:143607800-143611000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:143607800-143611800	Weak transcription	Dnd41	blood
9	chr4:143607800-143613600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr4:143608000-143609000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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