Variant report

Variant	rs10519666
Chromosome Location	chr4:143735270-143735271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs1017527	0.84[JPT][hapmap]
rs1031104	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10857399	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs11723982	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11724017	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11726381	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11736709	0.81[AMR][1000 genomes]
rs11933763	0.90[AMR][1000 genomes]
rs11943397	0.90[CHB][hapmap]
rs11944455	0.81[CHB][hapmap]
rs12509304	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12650777	0.84[JPT][hapmap]
rs1373030	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1373034	0.90[EUR][1000 genomes]
rs1441411	0.80[ASN][1000 genomes]
rs1441417	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs1443187	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap]
rs167960	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17016768	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17016777	0.88[AMR][1000 genomes]
rs17016779	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17016789	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17732408	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17732791	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1822362	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1899565	0.90[CHB][hapmap]
rs1992417	0.96[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992418	0.96[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1992652	0.84[ASN][1000 genomes]
rs2120158	0.90[CHB][hapmap]
rs2165819	0.87[EUR][1000 genomes]
rs331943	0.87[EUR][1000 genomes]
rs331944	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs331945	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331946	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs331947	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs331952	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331953	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs331954	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331956	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331958	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331959	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs331960	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331961	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs331962	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs331964	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs331965	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34831472	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4690698	0.90[CEU][hapmap];0.84[MEX][hapmap];0.84[EUR][1000 genomes]
rs4690699	0.86[MEX][hapmap]
rs4690700	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4690725	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4690727	0.92[EUR][1000 genomes]
rs56011189	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56332157	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs60263370	0.84[ASN][1000 genomes]
rs6537129	0.90[CHB][hapmap]
rs6822703	0.81[AMR][1000 genomes]
rs6830053	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6831562	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6839158	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs72728641	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs72728649	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72728651	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs72728654	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72728667	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72728681	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72728686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72728694	0.81[AMR][1000 genomes]
rs72728700	0.84[ASN][1000 genomes]
rs72730409	0.82[ASN][1000 genomes]
rs73850583	0.82[ASN][1000 genomes]
rs7656375	0.90[CHB][hapmap];0.81[AMR][1000 genomes]
rs7663475	0.90[CHB][hapmap]
rs7666140	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.92[EUR][1000 genomes]
rs7667183	0.88[AMR][1000 genomes]
rs7668552	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7668786	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7671783	0.84[JPT][hapmap]
rs7679151	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7685997	0.84[ASN][1000 genomes]
rs7688275	0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7695461	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7695514	0.91[JPT][hapmap]
rs978361	0.90[CHB][hapmap];0.84[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880174	chr4:143639498-143848024	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:143698800-143738600	Weak transcription	Aorta	Aorta
2	chr4:143718600-143736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr4:143724000-143737000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:143731800-143738400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr4:143732000-143744600	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr4:143732400-143736600	Weak transcription	Osteobl	bone
7	chr4:143732600-143737200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:143732600-143738600	Weak transcription	Esophagus	oesophagus
9	chr4:143732600-143745000	Weak transcription	Left Ventricle	heart
10	chr4:143732600-143749600	Weak transcription	Right Ventricle	heart
11	chr4:143733600-143735800	Weak transcription	Primary hematopoietic stem cells	blood
12	chr4:143733800-143737000	Weak transcription	Dnd41	blood
13	chr4:143734400-143736400	Enhancers	Small Intestine	intestine
14	chr4:143734800-143736400	Enhancers	Duodenum Mucosa	Duodenum
15	chr4:143735000-143735400	Enhancers	Fetal Heart	heart
16	chr4:143735000-143738400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr4:143735200-143736400	Enhancers	Fetal Intestine Large	intestine
18	chr4:143735200-143736800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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