Variant report

Variant	rs10519866
Chromosome Location	chr4:148003074-148003075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:147997064..147999039-chr4:148001355..148005540,3	K562	blood:

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs11929880	0.87[EUR][1000 genomes]
rs11934394	0.87[EUR][1000 genomes]
rs11935350	0.87[EUR][1000 genomes]
rs11935438	0.87[EUR][1000 genomes]
rs11936420	0.87[EUR][1000 genomes]
rs11940408	0.87[EUR][1000 genomes]
rs11940672	0.87[EUR][1000 genomes]
rs11940837	0.87[EUR][1000 genomes]
rs11940955	0.87[EUR][1000 genomes]
rs11941436	0.87[EUR][1000 genomes]
rs11941445	0.87[EUR][1000 genomes]
rs11941654	0.87[EUR][1000 genomes]
rs11941745	0.87[EUR][1000 genomes]
rs11941828	0.87[EUR][1000 genomes]
rs11941835	0.87[EUR][1000 genomes]
rs11942353	0.87[EUR][1000 genomes]
rs11942559	0.87[EUR][1000 genomes]
rs11942610	0.87[EUR][1000 genomes]
rs11944039	0.87[EUR][1000 genomes]
rs11945211	0.87[EUR][1000 genomes]
rs11945471	0.87[EUR][1000 genomes]
rs11945733	0.87[EUR][1000 genomes]
rs11946351	0.87[EUR][1000 genomes]
rs11946419	0.87[EUR][1000 genomes]
rs11947471	0.87[EUR][1000 genomes]
rs17022582	0.87[EUR][1000 genomes]
rs17022600	0.87[EUR][1000 genomes]
rs17022603	0.87[EUR][1000 genomes]
rs35044197	0.87[EUR][1000 genomes]
rs55693428	0.87[EUR][1000 genomes]
rs61415692	0.87[EUR][1000 genomes]
rs62341462	0.87[EUR][1000 genomes]
rs62341463	0.87[EUR][1000 genomes]
rs62341464	0.87[EUR][1000 genomes]
rs62341465	0.87[EUR][1000 genomes]
rs62341852	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62343681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62343682	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62343683	0.87[EUR][1000 genomes]
rs62343687	0.87[EUR][1000 genomes]
rs62343692	0.87[EUR][1000 genomes]
rs62343693	0.87[EUR][1000 genomes]
rs62343695	0.87[EUR][1000 genomes]
rs62343696	0.87[EUR][1000 genomes]
rs62343697	0.87[EUR][1000 genomes]
rs62343698	0.87[EUR][1000 genomes]
rs62343699	0.87[EUR][1000 genomes]
rs62343700	0.87[EUR][1000 genomes]
rs62343701	0.87[EUR][1000 genomes]
rs62343702	0.87[EUR][1000 genomes]
rs62343703	0.87[EUR][1000 genomes]
rs73853360	0.87[EUR][1000 genomes]
rs73853361	0.87[EUR][1000 genomes]
rs73853362	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880240	chr4:147905897-148032003	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1016598	chr4:147931134-148012064	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1024629	chr4:147987351-148277008	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148000800-148006000	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr4:148001400-148006400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr4:148001600-148011400	Weak transcription	Right Atrium	heart
4	chr4:148002800-148003200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:148003000-148005800	Weak transcription	Fetal Heart	heart

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