Variant report

Variant	rs10520285
Chromosome Location	chr4:175410505-175410506
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10520284	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17060524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060532	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17060547	0.93[EUR][1000 genomes]
rs17060557	0.93[EUR][1000 genomes]
rs17294646	1.00[ASW][hapmap]
rs17358909	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17359173	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17359381	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17360116	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs45445797	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs45446798	0.93[EUR][1000 genomes]
rs45471401	0.93[EUR][1000 genomes]
rs45498507	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4613543	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869116	chr4:175231090-175801761	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv525487	chr4:175400104-175470867	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv881299	chr4:175403673-175415442	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:175396000-175442800	Weak transcription	Esophagus	oesophagus
2	chr4:175406800-175412800	Weak transcription	Liver	Liver
3	chr4:175406800-175412800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:175406800-175415200	Weak transcription	Fetal Intestine Large	intestine
5	chr4:175406800-175415800	Weak transcription	Fetal Intestine Small	intestine
6	chr4:175407000-175410600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr4:175407000-175415000	Weak transcription	Primary T cells from cord blood	blood
8	chr4:175408200-175411600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:175409200-175415000	Weak transcription	Fetal Thymus	thymus
10	chr4:175409400-175424000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr4:175410000-175424600	Weak transcription	Fetal Stomach	stomach
12	chr4:175410000-175440800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr4:175410400-175411200	Genic enhancers	A549	lung
14	chr4:175410400-175412600	Enhancers	Hela-S3	cervix
15	chr4:175410400-175418000	Weak transcription	Rectal Smooth Muscle	rectum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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