Variant report

Variant	rs10520826
Chromosome Location	chr5:15837943-15837944
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16867783	0.90[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16867790	0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs16867796	0.81[AFR][1000 genomes]
rs2174438	0.82[LWK][hapmap];0.85[YRI][hapmap]
rs55896316	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58117745	1.00[AMR][1000 genomes]
rs6894588	0.82[LWK][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes]
rs73062124	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73062151	0.81[AFR][1000 genomes]
rs7713929	0.85[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
10	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15833000-15838200	Weak transcription	Right Ventricle	heart
2	chr5:15833800-15840800	Weak transcription	Psoas Muscle	Psoas
3	chr5:15834000-15839000	Enhancers	Fetal Lung	lung
4	chr5:15835000-15838600	Enhancers	HSMMtube	muscle
5	chr5:15835200-15838000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr5:15836000-15838000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr5:15836000-15838000	Weak transcription	NHDF-Ad	bronchial
8	chr5:15836200-15838000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr5:15836600-15838600	Enhancers	Right Atrium	heart
10	chr5:15837000-15838000	Weak transcription	Left Ventricle	heart
11	chr5:15837000-15838200	Enhancers	Fetal Heart	heart
12	chr5:15837000-15838600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr5:15837000-15838600	Enhancers	NHLF	lung
14	chr5:15837000-15841800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr5:15837200-15838000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr5:15837400-15838600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
17	chr5:15837600-15838400	Enhancers	Colon Smooth Muscle	Colon
18	chr5:15837600-15838400	Enhancers	HSMM	muscle
19	chr5:15837800-15838200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr5:15837800-15839000	Enhancers	Ovary	ovary
21	chr5:15837800-15841800	Weak transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links