Variant report

Variant	rs10521434
Chromosome Location	chr9:72448995-72448996
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:72443896..72446419-chr9:72448241..72450702,2	MCF-7	breast:
2	chr9:72437046..72439093-chr9:72448277..72451553,3	K562	blood:
3	chr9:72437772..72439423-chr9:72448142..72450322,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11140470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11140833	1.00[CHB][hapmap]
rs11140836	1.00[CHB][hapmap]
rs11140842	1.00[CHB][hapmap]
rs11140890	1.00[CHB][hapmap]
rs12337927	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12344550	1.00[CHB][hapmap]
rs12347511	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411408	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1556208	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17439752	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17517599	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17518030	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17518268	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4366141	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7029206	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036155	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs72723208	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs72723215	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723218	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723219	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72723223	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854014	1.00[YRI][hapmap]
rs7866489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050920	chr9:72345297-72579301	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv831611	chr9:72361905-72512134	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv893438	chr9:72363992-72720438	Weak transcription Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:72440000-72451400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:72440600-72457600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr9:72441600-72467200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr9:72442800-72457600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:72442800-72480200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:72445000-72449400	Enhancers	Primary T cells from cord blood	blood
7	chr9:72445400-72450200	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr9:72445600-72450400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr9:72445800-72449000	Weak transcription	Fetal Thymus	thymus
10	chr9:72445800-72449200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr9:72445800-72450600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr9:72448600-72449000	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr9:72448600-72449000	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:72448600-72451000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
15	chr9:72448600-72451200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
16	chr9:72448800-72449000	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr9:72448800-72449400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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