Variant report

Variant	rs10553978
Chromosome Location	chr3:145941635-145941636
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr3:145940041-145942138	HUVEC	blood vessel:	n/a	chr3:145941406-145941418 chr3:145941382-145941392 chr3:145941407-145941417 chr3:145941384-145941391 chr3:145941382-145941391 chr3:145941381-145941393 chr3:145941381-145941392 chr3:145941383-145941392 chr3:145941407-145941417 chr3:145941382-145941392

Variant related genes	Relation type
PLSCR4	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012485	chr3:145861750-145947125	Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536758	chr3:145861750-145947125	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv877614	chr3:145903426-146025896	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv877615	chr3:145910430-145988231	ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	2 gene(s)	inside rSNPs	diseases
5	nsv877616	chr3:145921954-145983688	Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv3333601	chr3:145940702-146068210	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3416330	chr3:145941029-146068457	Enhancers Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv234055	chr3:145941635-145941636	Weak transcription Enhancers	TF binding region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:145924400-145944000	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:145924400-145945200	Weak transcription	HSMMtube	muscle
3	chr3:145925000-145945600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:145925400-145952800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr3:145925600-145950800	Weak transcription	Fetal Kidney	kidney
6	chr3:145932600-145943800	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:145934600-145952200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr3:145936000-145945200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr3:145940400-145942000	Enhancers	Fetal Intestine Large	intestine
10	chr3:145940600-145943600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:145940600-145944800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:145940600-145953000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr3:145940600-145953600	Weak transcription	NHDF-Ad	bronchial
14	chr3:145940800-145941800	Weak transcription	Fetal Lung	lung
15	chr3:145940800-145943200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:145940800-145944000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:145940800-145944000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr3:145940800-145944400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:145940800-145944400	Weak transcription	Fetal Stomach	stomach
20	chr3:145940800-145945000	Weak transcription	Aorta	Aorta
21	chr3:145940800-145945000	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr3:145940800-145945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr3:145940800-145945200	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr3:145941000-145942200	Enhancers	HUVEC	blood vessel
25	chr3:145941200-145942200	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr3:145941400-145941800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr3:145941400-145941800	Enhancers	A549	lung
28	chr3:145941400-145942000	Enhancers	Liver	Liver
29	chr3:145941400-145944800	Weak transcription	Adipose Nuclei	Adipose
30	chr3:145941400-145944800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr3:145941400-145945000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr3:145941400-145945800	Weak transcription	NHLF	lung
33	chr3:145941400-145948400	Weak transcription	Osteobl	bone
34	chr3:145941600-145942000	Enhancers	HepG2	liver
35	chr3:145941600-145943400	Weak transcription	Lung	lung
36	chr3:145941600-145945000	Weak transcription	Ovary	ovary
37	chr3:145941600-145945000	Weak transcription	Pancreas	Pancrea
38	chr3:145941600-145946000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:145941600-145947000	Weak transcription	Right Atrium	heart
40	chr3:145941600-145952200	Weak transcription	Left Ventricle	heart
41	chr3:145941600-145952600	Weak transcription	Fetal Intestine Small	intestine
42	chr3:145941600-145954000	Weak transcription	Muscle Satellite Cultured Cells	--

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