Variant report

Variant	rs1056879
Chromosome Location	chr14:35591174-35591175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr14:35590808-35592042	K562	blood:	n/a	chr14:35591873-35591882
2	POLR2A	chr14:35590765-35592164	HUVEC	blood vessel:	n/a	n/a
3	YY1	chr14:35590917-35591945	GM12892	blood:	n/a	chr14:35591676-35591690 chr14:35591276-35591298 chr14:35591728-35591739
4	E2F6	chr14:35590794-35592193	K562	blood:	n/a	chr14:35591481-35591488 chr14:35591481-35591489 chr14:35591480-35591488 chr14:35591485-35591494 chr14:35591481-35591489
5	STAT1	chr14:35591016-35592011	GM12878	blood:	n/a	n/a
6	CEBPB	chr14:35590944-35591690	H1-hESC	embryonic stem cell:	n/a	chr14:35591541-35591552
7	ELK1	chr14:35590898-35592296	GM12878	blood:	n/a	n/a
8	POLR2A	chr14:35590731-35592226	GM12891	blood:	n/a	n/a
9	YY1	chr14:35590759-35592233	HepG2	liver:	n/a	chr14:35591676-35591690 chr14:35591276-35591298 chr14:35591728-35591739
10	TCF7L2	chr14:35590876-35591804	PANC-1	pancreas:	n/a	n/a
11	GTF2F1	chr14:35590835-35592198	H1-hESC	embryonic stem cell:	n/a	n/a
12	SP2	chr14:35590442-35592135	HepG2	liver:	n/a	n/a
13	FOXA1	chr14:35590955-35591301	T-47D	breast:	n/a	n/a
14	SRF	chr14:35590781-35591506	HepG2	liver:	n/a	n/a
15	MYBL2	chr14:35590302-35592745	HepG2	liver:	n/a	n/a
16	ARID3A	chr14:35590633-35592472	HepG2	liver:	n/a	chr14:35591480-35591488
17	POLR2A	chr14:35590240-35592733	MCF10A-Er-Src	breast:	n/a	n/a
18	ATF2	chr14:35591095-35591822	GM12878	blood:	n/a	n/a
19	MAZ	chr14:35590830-35592139	HepG2	liver:	n/a	chr14:35591490-35591509 chr14:35591494-35591505 chr14:35591495-35591504 chr14:35591493-35591506 chr14:35591495-35591504 chr14:35591495-35591504 chr14:35591486-35591502
20	ZMIZ1	chr14:35590747-35591983	K562	blood:	n/a	n/a
21	SP1	chr14:35590655-35592113	A549	lung:	n/a	chr14:35591028-35591042 chr14:35591035-35591046 chr14:35591036-35591050 chr14:35591089-35591100
22	TAF1	chr14:35590888-35592068	GM12878	blood:	n/a	n/a
23	YY1	chr14:35590740-35592242	GM12892	blood:	n/a	chr14:35591676-35591690 chr14:35591276-35591298 chr14:35591728-35591739
24	ETS1	chr14:35590843-35592056	GM12878	blood:	n/a	chr14:35591859-35591870 chr14:35591748-35591761 chr14:35591085-35591098
25	POLR2A	chr14:35590793-35591326	K562	blood:	n/a	n/a
26	POLR2A	chr14:35590837-35592231	MCF-7	breast:	n/a	n/a
27	HEY1	chr14:35590476-35591512	K562	blood:	n/a	n/a
28	EP300	chr14:35590841-35591426	T-47D	breast:	n/a	n/a
29	POLR2A	chr14:35590706-35592161	HL-60	blood:	n/a	n/a
30	TCF3	chr14:35590956-35591226	GM12878	blood:	n/a	n/a
31	GABPA	chr14:35590725-35592145	SK-N-SH	brain:	n/a	chr14:35591484-35591495 chr14:35591484-35591498 chr14:35591486-35591495 chr14:35591004-35591011
32	TBL1XR1	chr14:35590764-35591900	K562	blood:	n/a	n/a
33	MAX	chr14:35590517-35593028	HepG2	liver:	n/a	chr14:35591490-35591509 chr14:35591494-35591505 chr14:35591495-35591504 chr14:35591493-35591506 chr14:35591495-35591504 chr14:35591495-35591504 chr14:35591486-35591502
34	POLR2A	chr14:35590760-35592194	K562	blood:	n/a	n/a
35	ZNF143	chr14:35590673-35592026	Hela-S3	cervix:	n/a	chr14:35591742-35591760 chr14:35591738-35591753
36	CREB1	chr14:35590990-35591925	ECC-1	luminal epithelium:	n/a	n/a
37	MXI1	chr14:35590938-35592178	K562	blood:	n/a	chr14:35591496-35591505
38	TAF1	chr14:35590349-35592300	H1-hESC	embryonic stem cell:	n/a	n/a
39	SIN3AK20	chr14:35591007-35592121	A549	lung:	n/a	n/a
40	POLR2A	chr14:35590802-35592073	A549	lung:	n/a	n/a
41	RCOR1	chr14:35590865-35592210	Hela-S3	cervix:	n/a	n/a
42	SRF	chr14:35590788-35592128	MCF-7	breast:	n/a	n/a
43	YY1	chr14:35590850-35592020	HCT-116	colon:	n/a	chr14:35591676-35591690 chr14:35591276-35591298 chr14:35591728-35591739
44	TCF3	chr14:35590891-35591297	GM12878	blood:	n/a	n/a
45	BHLHE40	chr14:35590665-35592190	K562	blood:	n/a	n/a
46	NFIC	chr14:35590740-35591850	GM12878	blood:	n/a	n/a
47	POLR2A	chr14:35590505-35592353	HepG2	liver:	n/a	n/a
48	POLR2A	chr14:35590631-35592302	HUVEC	blood vessel:	n/a	n/a
49	HEY1	chr14:35590748-35592139	K562	blood:	n/a	chr14:35591728-35591743
50	TAF1	chr14:35591025-35591581	GM12891	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:35342738..35344659-chr14:35589687..35591484,2	K562	blood:
2	chr14:35450245..35452169-chr14:35590215..35593362,3	MCF-7	breast:
3	chr14:35341168..35344675-chr14:35590606..35593872,6	MCF-7	breast:
4	chr10:134144877..134145604-chr14:35591124..35591775,2	Hela-S3	cervix:
5	chr12:54673261..54673894-chr14:35590757..35591369,2	Hela-S3	cervix:
6	chr14:35450019..35452754-chr14:35591061..35594828,4	K562	blood:
7	chr11:66056160..66056721-chr14:35590740..35591268,2	Hela-S3	cervix:
8	chr14:35590489..35591401-chr15:91445904..91446665,2	Hela-S3	cervix:
9	chr1:1709416..1709919-chr14:35590889..35591481,2	Hela-S3	cervix:
10	chr14:35514347..35518167-chr14:35589018..35591815,3	K562	blood:
11	chr14:35568810..35572401-chr14:35587846..35592624,4	MCF-7	breast:
12	chr14:35450042..35454830-chr14:35589505..35593708,8	K562	blood:
13	chr14:35450146..35454994-chr14:35588530..35593322,8	MCF-7	breast:
14	chr1:45196086..45196947-chr14:35590878..35591536,2	Hela-S3	cervix:
15	chr14:35589196..35594400-chr14:35871301..35877730,13	MCF-7	breast:
16	chr14:35513731..35517214-chr14:35589119..35593617,5	MCF-7	breast:
17	chr14:35589240..35593864-chr14:35869008..35876501,20	MCF-7	breast:
18	chr14:35342567..35345567-chr14:35590904..35592504,3	MCF-7	breast:
19	chr14:35590512..35592667-chr14:35626960..35629855,2	MCF-7	breast:
20	chr14:35519480..35523190-chr14:35588742..35592990,5	MCF-7	breast:
21	chr14:35514347..35516079-chr14:35590063..35591815,2	K562	blood:
22	chr14:35512802..35518057-chr14:35589980..35593805,9	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-BAZ1A-3	chr14:35591108-35591185	NONHSAT036363

Variant related genes	Relation type
KIAA0391	TF binding region
ENSG00000258790	TF binding region
PPP2R3C	TF binding region
ENSG00000258738	Chromatin interaction
ENSG00000258704	Chromatin interaction
ENSG00000094916	Chromatin interaction
ENSG00000151327	Chromatin interaction
ENSG00000196547	Chromatin interaction
ENSG00000100883	Chromatin interaction
ENSG00000259090	Chromatin interaction
ENSG00000100906	Chromatin interaction
ENSG00000165752	Chromatin interaction
ENSG00000174851	Chromatin interaction
ENSG00000008130	Chromatin interaction
ENSG00000198604	Chromatin interaction
ENSG00000200169	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1028449	0.82[JPT][hapmap]
rs11156875	0.82[CHD][hapmap]
rs11845837	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11851907	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879871	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12895051	0.82[JPT][hapmap]
rs17102967	0.82[JPT][hapmap]
rs17102970	0.85[JPT][hapmap]
rs17103005	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17103034	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1807161	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1961195	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1967723	0.82[JPT][hapmap]
rs2143950	0.82[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs2179890	0.81[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2236167	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2273158	0.82[JPT][hapmap]
rs2383689	0.82[JPT][hapmap]
rs2415260	0.83[ASN][1000 genomes]
rs2415261	0.83[ASN][1000 genomes]
rs2415262	0.83[ASN][1000 genomes]
rs28365850	0.83[ASN][1000 genomes]
rs28397987	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.98[TSI][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28765972	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2899830	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3809449	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs4456414	0.85[ASN][1000 genomes]
rs4594164	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs55977244	0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56027918	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57075379	0.82[ASN][1000 genomes]
rs57473972	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58770366	0.86[ASN][1000 genomes]
rs7142489	0.80[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.90[TSI][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7144423	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs7144617	0.82[JPT][hapmap]
rs7145474	0.82[JPT][hapmap]
rs7146682	1.00[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];0.90[JPT][hapmap];0.98[TSI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7153068	0.82[JPT][hapmap]
rs7153550	0.82[JPT][hapmap]
rs7153660	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7156322	0.82[JPT][hapmap]
rs7158416	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7158634	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7159324	0.82[CHD][hapmap]
rs72664807	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72680650	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8005406	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8006583	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8006884	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8006935	0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs8014091	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8014377	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs8017225	0.82[JPT][hapmap]
rs8018114	0.82[JPT][hapmap]
rs8019179	0.82[JPT][hapmap]
rs8019351	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs941653	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs9671773	0.86[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9672061	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949617	chr14:35379923-35825436	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv1043470	chr14:35398522-35754029	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv542031	chr14:35398522-35754029	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
4	nsv564264	chr14:35482797-35732369	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
5	nsv901615	chr14:35485748-35630175	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
6	nsv870305	chr14:35488290-35852349	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
7	nsv1052800	chr14:35509858-35607117	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
8	nsv1044515	chr14:35510785-35756317	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv564265	chr14:35512335-35624831	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv1046992	chr14:35527239-35724227	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
11	nsv1051274	chr14:35529529-35724227	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
12	nsv1048823	chr14:35537281-35724892	Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
13	nsv542032	chr14:35537281-35724892	Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
14	nsv1040540	chr14:35537481-35724753	Strong transcription Weak transcription Genic enhancers Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
15	nsv542033	chr14:35537481-35724753	Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
16	nsv1042625	chr14:35546094-35680358	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
17	nsv1050123	chr14:35546114-35724892	Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
18	nsv542034	chr14:35546114-35724892	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
19	nsv1050700	chr14:35548276-35639084	Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
20	nsv1043692	chr14:35548276-35720016	Weak transcription Strong transcription Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
21	nsv1053604	chr14:35548276-35825805	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
22	nsv542035	chr14:35563220-35607117	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
23	nsv1047992	chr14:35563220-35639084	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
24	nsv1052392	chr14:35563220-35893309	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
25	nsv542036	chr14:35563220-35893309	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	83 gene(s)	inside rSNPs	diseases
26	nsv1053978	chr14:35571762-35639084	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
27	nsv534182	chr14:35579022-35620232	Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs1056879	PPP2R3C	cis	parietal	SCAN
rs1056879	PPP2R3C	cis	lymphoblastoid	seeQTL
rs1056879	PPP2R3C	cis	multi-tissue	Pritchard
rs1056879	FOXA1	cis	cerebellum	SCAN
rs1056879	FAM177A1	cis	cerebellum	SCAN
rs1056879	PPP2R3C	cis	Whole Blood	GTEx
rs1056879	PPP2R3C	cis	Liver	GTEx
rs1056879	PPP2R3C	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35589400-35593000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr14:35589800-35592200	Active TSS	Stomach Smooth Muscle	stomach
3	chr14:35589800-35592600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr14:35589800-35592600	Active TSS	Fetal Brain Female	brain
5	chr14:35589800-35593200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:35589800-35595000	Active TSS	K562	blood
7	chr14:35590000-35592400	Active TSS	Ovary	ovary
8	chr14:35590000-35592400	Active TSS	Right Ventricle	heart
9	chr14:35590000-35592400	Active TSS	NHLF	lung
10	chr14:35590000-35592600	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr14:35590000-35592800	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr14:35590000-35592800	Active TSS	Pancreatic Islets	Pancreatic Islet
13	chr14:35590000-35592800	Active TSS	A549	lung
14	chr14:35590000-35593000	Active TSS	H9 Cell Line	embryonic stem cell
15	chr14:35590000-35593000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr14:35590200-35592000	Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr14:35590200-35592200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:35590200-35592200	Active TSS	Brain Angular Gyrus	brain
19	chr14:35590200-35592200	Active TSS	Brain Cingulate Gyrus	brain
20	chr14:35590200-35592200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:35590200-35592200	Active TSS	HMEC	breast
22	chr14:35590200-35592200	Active TSS	HUVEC	blood vessel
23	chr14:35590200-35592200	Active TSS	NH-A	brain
24	chr14:35590200-35592400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr14:35590200-35592400	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr14:35590200-35592400	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr14:35590200-35592400	Active TSS	Colon Smooth Muscle	Colon
28	chr14:35590200-35592400	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr14:35590200-35592400	Active TSS	Esophagus	oesophagus
30	chr14:35590200-35592400	Active TSS	Fetal Stomach	stomach
31	chr14:35590200-35592400	Active TSS	Placenta Amnion	Placenta Amnion
32	chr14:35590200-35592400	Active TSS	Rectal Mucosa Donor 29	rectum
33	chr14:35590200-35592400	Active TSS	Rectal Mucosa Donor 31	rectum
34	chr14:35590200-35592400	Active TSS	Hela-S3	cervix
35	chr14:35590200-35592600	Active TSS	H1 Cell Line	embryonic stem cell
36	chr14:35590200-35592600	Active TSS	HUES6 Cell Line	embryonic stem cell
37	chr14:35590200-35592600	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr14:35590200-35592600	Active TSS	iPS-18 Cell Line	embryonic stem cell
39	chr14:35590200-35592600	Active TSS	Muscle Satellite Cultured Cells	--
40	chr14:35590200-35592600	Active TSS	Fetal Intestine Small	intestine
41	chr14:35590200-35592600	Active TSS	Left Ventricle	heart
42	chr14:35590200-35592600	Active TSS	Pancreas	Pancrea
43	chr14:35590200-35592600	Active TSS	GM12878-XiMat	blood
44	chr14:35590200-35592600	Active TSS	NHDF-Ad	bronchial
45	chr14:35590200-35592600	Active TSS	NHEK	skin
46	chr14:35590200-35592800	Active TSS	ES-I3 Cell Line	embryonic stem cell
47	chr14:35590200-35592800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:35590200-35592800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
49	chr14:35590200-35592800	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
50	chr14:35590200-35592800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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