Variant report

Variant	rs1062193
Chromosome Location	chr6:64292153-64292154
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:64290396..64294486-chr6:64298026..64303113,5	K562	blood:
2	chr1:186344423..186344941-chr6:64291996..64292717,2	Hela-S3	cervix:
3	chr17:48133854..48134506-chr6:64291775..64292728,2	Hela-S3	cervix:
4	chr2:113341763..113342618-chr6:64292149..64292709,2	Hela-S3	cervix:
5	chr6:64288992..64292789-chr6:64292911..64296386,5	MCF-7	breast:
6	chr6:64199086..64201275-chr6:64290295..64292893,2	MCF-7	breast:
7	chr6:64291509..64294150-chr6:64344791..64347241,2	K562	blood:
8	chr6:64290346..64292394-chr6:64297512..64299743,2	MCF-7	breast:
9	chr6:64292060..64293856-chr6:64342252..64344246,2	MCF-7	breast:
10	chr6:64292083..64294110-chr6:64297044..64299056,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000157181	Chromatin interaction
ENSG00000125611	Chromatin interaction
ENSG00000047410	Chromatin interaction
ENSG00000118482	Chromatin interaction

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11754293	1.00[JPT][hapmap]
rs11755111	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11756680	0.96[ASN][1000 genomes]
rs11757655	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11759362	0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11759581	1.00[JPT][hapmap]
rs1197892	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1210839	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1681953	0.82[CEU][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1681967	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16879705	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894454	1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16894460	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16894480	0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16894491	1.00[JPT][hapmap]
rs16894493	1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1744156	1.00[ASW][hapmap];0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1744163	1.00[ASW][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.90[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1872288	0.82[ASW][hapmap];0.82[CEU][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1905595	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1905597	1.00[JPT][hapmap]
rs1923521	0.96[ASN][1000 genomes]
rs1923522	0.96[ASN][1000 genomes]
rs2075656	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2622310	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2622313	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28396397	0.96[ASN][1000 genomes]
rs28635226	0.96[ASN][1000 genomes]
rs2881842	0.95[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35468218	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35811627	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3800494	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3857527	0.95[ASN][1000 genomes]
rs4710434	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56950873	0.96[ASN][1000 genomes]
rs56977573	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57258726	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57519486	0.96[ASN][1000 genomes]
rs57899418	0.96[ASN][1000 genomes]
rs58016244	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58173616	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58374599	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58779953	0.96[ASN][1000 genomes]
rs59458355	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs59589817	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60727297	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60863270	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61382532	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61426335	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61580957	0.95[ASN][1000 genomes]
rs6454298	0.82[AFR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66500769	0.96[ASN][1000 genomes]
rs66508463	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66559225	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66618112	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66648865	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66683185	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66769846	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66924207	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66943356	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66984720	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67048845	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67118169	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67125777	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67260200	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67549604	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67640372	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67805256	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67879075	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67885904	0.86[ASN][1000 genomes]
rs6929720	0.82[CEU][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936079	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72880852	0.82[ASN][1000 genomes]
rs72880876	0.96[ASN][1000 genomes]
rs72880879	0.96[ASN][1000 genomes]
rs72880884	0.96[ASN][1000 genomes]
rs72882716	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72882748	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs72882751	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7746492	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7766283	0.82[CEU][hapmap];0.95[CHD][hapmap];1.00[JPT][hapmap];0.80[LWK][hapmap];0.88[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7766347	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7767556	0.96[ASN][1000 genomes]
rs9449520	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:64284000-64294000	Weak transcription	Spleen	Spleen
2	chr6:64284000-64297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:64284200-64294200	Weak transcription	Gastric	stomach
4	chr6:64284200-64294400	Weak transcription	Lung	lung
5	chr6:64284400-64292600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:64284400-64294400	Weak transcription	Aorta	Aorta
7	chr6:64284400-64296200	Weak transcription	Ovary	ovary
8	chr6:64284600-64294800	Weak transcription	Right Ventricle	heart
9	chr6:64284800-64307600	Weak transcription	Fetal Stomach	stomach
10	chr6:64285000-64294800	Weak transcription	Stomach Mucosa	stomach
11	chr6:64285400-64293600	Weak transcription	Fetal Heart	heart
12	chr6:64285400-64294600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr6:64285600-64292800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr6:64285600-64295800	Weak transcription	Fetal Intestine Small	intestine
15	chr6:64285800-64293000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr6:64286000-64292800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr6:64286200-64292200	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:64286200-64292800	Strong transcription	HUES48 Cell Line	embryonic stem cell
19	chr6:64286200-64292800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr6:64286200-64292800	Strong transcription	Primary monocytes fromperipheralblood	blood
21	chr6:64286200-64292800	Strong transcription	HUVEC	blood vessel
22	chr6:64286200-64293000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr6:64286200-64293000	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr6:64286200-64293000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr6:64286200-64293000	Strong transcription	Fetal Thymus	thymus
26	chr6:64286200-64293800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr6:64286200-64294000	Strong transcription	Primary B cells from cord blood	blood
28	chr6:64286200-64294000	Strong transcription	Monocytes-CD14+_RO01746	blood
29	chr6:64286200-64294400	Strong transcription	HSMM	muscle
30	chr6:64286400-64293000	Strong transcription	Primary B cells from peripheral blood	blood
31	chr6:64286400-64293000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr6:64286400-64293000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr6:64286400-64293200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:64286400-64293400	Strong transcription	NHLF	lung
35	chr6:64286400-64293600	Strong transcription	Placenta	Placenta
36	chr6:64286400-64294000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr6:64286600-64293000	Strong transcription	Primary neutrophils fromperipheralblood	blood
38	chr6:64286600-64293000	Strong transcription	Rectal Mucosa Donor 31	rectum
39	chr6:64286600-64293200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:64286600-64293200	Strong transcription	HMEC	breast
41	chr6:64286600-64293200	Strong transcription	NH-A	brain
42	chr6:64286600-64293200	Strong transcription	Osteobl	bone
43	chr6:64286600-64293600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr6:64286600-64294800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr6:64287200-64294000	Strong transcription	Muscle Satellite Cultured Cells	--
46	chr6:64287200-64294200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:64287200-64294400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr6:64287200-64294600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr6:64287200-64294600	Strong transcription	Dnd41	blood
50	chr6:64287200-64294800	Weak transcription	Brain Germinal Matrix	brain

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