Variant report

Variant	rs10671102
Chromosome Location	chr11:35479051-35479052
allele	-/GT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12275544	1.00[AMR][1000 genomes]
rs61618750	1.00[AMR][1000 genomes]
rs7122176	1.00[AMR][1000 genomes]
rs7131582	1.00[AMR][1000 genomes]
rs7938263	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2758264	chr11:35319320-35480522	Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2759819	chr11:35319320-35480522	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35469000-35499000	Weak transcription	Brain Anterior Caudate	brain
2	chr11:35469200-35488600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:35469600-35499000	Weak transcription	Brain Substantia Nigra	brain
4	chr11:35470400-35493800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:35470600-35480000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:35471000-35501600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:35471200-35479800	Strong transcription	NHDF-Ad	bronchial
8	chr11:35471400-35480600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:35471400-35484800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr11:35471400-35499600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:35471400-35503600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr11:35471600-35484800	Weak transcription	Fetal Stomach	stomach
13	chr11:35471600-35499200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr11:35472200-35479600	Weak transcription	Psoas Muscle	Psoas
15	chr11:35475000-35488600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr11:35476600-35479400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:35476600-35488800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr11:35478200-35480400	Weak transcription	Osteobl	bone
19	chr11:35478600-35479600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr11:35478800-35479600	Strong transcription	NHLF	lung

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