Variant report

Variant	rs10688872
Chromosome Location	chr5:124755864-124755865
allele	-/TATA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030992	chr5:124708549-125391503	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv537892	chr5:124708549-125391503	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv3421778	chr5:124754803-124757101	Weak transcription Active TSS Enhancers	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:124750000-124756800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:124750400-124759800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr5:124750400-124760400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:124750600-124756800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr5:124751000-124756200	Weak transcription	Fetal Brain Female	brain
6	chr5:124751200-124756600	Weak transcription	Brain Germinal Matrix	brain
7	chr5:124751200-124758000	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr5:124751200-124760200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:124751600-124756000	Weak transcription	Fetal Brain Male	brain
10	chr5:124751600-124756800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr5:124751800-124760400	Weak transcription	Fetal Kidney	kidney
12	chr5:124753000-124756600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr5:124753000-124756600	Weak transcription	Brain Substantia Nigra	brain
14	chr5:124753000-124760000	Weak transcription	Brain Angular Gyrus	brain
15	chr5:124753600-124760000	Weak transcription	Brain Anterior Caudate	brain
16	chr5:124753800-124756600	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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