Variant report

Variant	rs1073461
Chromosome Location	chr1:220726800-220726801
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10495150	0.83[ASW][hapmap];1.00[CEU][hapmap];0.91[LWK][hapmap];0.82[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap]
rs11803495	1.00[EUR][1000 genomes]
rs1193031	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs12070516	0.83[ASW][hapmap];1.00[CEU][hapmap];0.94[LWK][hapmap];0.85[MEX][hapmap];1.00[TSI][hapmap]
rs1337571	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2589592	0.83[YRI][hapmap];0.83[AFR][1000 genomes]
rs2786612	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59609557	1.00[EUR][1000 genomes]
rs6541152	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.82[MEX][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6541153	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6660022	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[ASN][1000 genomes]
rs6667072	1.00[EUR][1000 genomes]
rs6668644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6669644	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672055	1.00[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6676051	1.00[CEU][hapmap]
rs6676985	1.00[ASN][1000 genomes]
rs6696723	0.87[EUR][1000 genomes]
rs73093505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73093530	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73101842	0.87[EUR][1000 genomes]
rs73101870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73107667	1.00[EUR][1000 genomes]
rs7512507	1.00[CEU][hapmap];0.87[EUR][1000 genomes]
rs7518985	1.00[CEU][hapmap]
rs7547630	1.00[CEU][hapmap]
rs7547728	1.00[CEU][hapmap]
rs7556342	1.00[CEU][hapmap]
rs767374	1.00[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1073461	HBG2	trans	brain	seeQTL
rs1073461	HBG1	trans	brain	seeQTL

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220718000-220738600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:220718600-220731200	Weak transcription	Esophagus	oesophagus
3	chr1:220718600-220738600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr1:220718600-220739000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:220722600-220738800	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr1:220723200-220738600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr1:220724200-220726800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:220724200-220727800	Enhancers	Fetal Heart	heart
9	chr1:220724400-220727400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr1:220724400-220727400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr1:220724400-220743400	Weak transcription	Fetal Brain Male	brain
12	chr1:220724600-220726800	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr1:220724600-220729000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr1:220724600-220729200	Weak transcription	Adipose Nuclei	Adipose
15	chr1:220724600-220737600	Weak transcription	Fetal Brain Female	brain
16	chr1:220724600-220741600	Weak transcription	Aorta	Aorta
17	chr1:220724800-220728800	Weak transcription	Fetal Muscle Leg	muscle
18	chr1:220724800-220738800	Weak transcription	Right Atrium	heart
19	chr1:220725200-220726800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr1:220725200-220728000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr1:220726000-220732600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr1:220726200-220726800	Weak transcription	Brain Germinal Matrix	brain
23	chr1:220726200-220726800	Enhancers	HMEC	breast
24	chr1:220726200-220727200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr1:220726200-220727400	Enhancers	NHEK	skin
26	chr1:220726200-220728000	Enhancers	Left Ventricle	heart
27	chr1:220726600-220726800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr1:220726600-220727400	Strong transcription	Fetal Muscle Trunk	muscle
29	chr1:220726800-220727000	Strong transcription	Brain Germinal Matrix	brain
30	chr1:220726800-220727800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr1:220726800-220729000	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr1:220726800-220729000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr1:220726800-220729400	Weak transcription	HMEC	breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links