Variant report

Variant	rs10735507
Chromosome Location	chr1:210688180-210688181
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10863839	0.92[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs11119520	0.94[EUR][1000 genomes]
rs12049235	0.82[AFR][1000 genomes];0.80[ASN][1000 genomes]
rs12121566	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs12411254	0.81[CHD][hapmap]
rs12748886	0.85[CHB][hapmap]
rs12759944	0.84[CHB][hapmap]
rs17016349	0.85[CHB][hapmap]
rs4545340	0.89[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap];0.85[YRI][hapmap];0.99[ASN][1000 genomes]
rs6540601	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6672183	0.96[CEU][hapmap];0.93[TSI][hapmap];0.95[EUR][1000 genomes]
rs7544655	0.84[CHB][hapmap];0.89[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873147	chr1:210665583-210696806	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv873148	chr1:210665583-210994339	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10735507	KCNH1	cis	parietal	SCAN
rs10735507	HHAT	cis	lymphoblastoid	seeQTL

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210674400-210719600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr1:210679800-210689400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:210680600-210731000	Weak transcription	HSMM	muscle
4	chr1:210685600-210689400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:210685800-210689800	Weak transcription	Pancreas	Pancrea
6	chr1:210687200-210689600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr1:210687400-210688400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr1:210687600-210688400	Strong transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links