Variant report

Variant	rs10735596
Chromosome Location	chr9:71044126-71044127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FOXD4L3-4	chr9:71043498-71044285	ENSG00000229019.1

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10116868	0.86[JPT][hapmap]
rs10511958	0.86[JPT][hapmap]
rs10780922	0.89[ASW][hapmap];0.85[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10780935	0.83[ASW][hapmap];0.81[CEU][hapmap];0.82[JPT][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.88[EUR][1000 genomes]
rs10780962	0.86[JPT][hapmap]
rs10780963	0.91[JPT][hapmap]
rs10780967	0.82[JPT][hapmap]
rs10868795	0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10868796	0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10868803	0.81[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868804	0.91[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10868851	0.86[JPT][hapmap]
rs10868852	0.86[JPT][hapmap]
rs10868877	0.86[JPT][hapmap]
rs10868879	0.89[JPT][hapmap]
rs11142075	0.81[JPT][hapmap]
rs11142179	0.84[CEU][hapmap];0.87[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.87[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11142199	0.86[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11142305	0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11142334	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11142335	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11142549	0.86[JPT][hapmap]
rs12000789	0.86[JPT][hapmap]
rs12353500	0.91[JPT][hapmap]
rs1353009	0.86[JPT][hapmap]
rs1492822	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1492824	0.89[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];0.96[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1602751	0.86[EUR][1000 genomes]
rs17056009	0.82[CHB][hapmap];0.91[JPT][hapmap]
rs1887889	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1976232	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2026033	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2026034	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2149565	0.85[EUR][1000 genomes]
rs4237245	0.81[JPT][hapmap]
rs4744594	0.91[JPT][hapmap]
rs4745015	0.86[EUR][1000 genomes]
rs4745041	0.82[JPT][hapmap]
rs6560144	0.86[JPT][hapmap]
rs7020465	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[TSI][hapmap];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7025140	0.82[CEU][hapmap];0.91[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7029177	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7039149	0.82[JPT][hapmap]
rs7039686	0.86[JPT][hapmap]
rs7042123	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427847	chr9:70318730-71153527	Weak transcription Bivalent/Poised TSS Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:70997800-71052600	Weak transcription	HSMMtube	muscle
2	chr9:71038600-71046600	Enhancers	Rectal Smooth Muscle	rectum
3	chr9:71040600-71049000	Enhancers	Colon Smooth Muscle	Colon
4	chr9:71042200-71048000	Weak transcription	Small Intestine	intestine
5	chr9:71042400-71045400	Weak transcription	NHLF	lung
6	chr9:71042400-71046000	Weak transcription	Left Ventricle	heart
7	chr9:71042600-71044800	Enhancers	Stomach Smooth Muscle	stomach
8	chr9:71043400-71050800	Weak transcription	Aorta	Aorta
9	chr9:71043400-71052200	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr9:71043600-71048000	Weak transcription	Fetal Lung	lung
11	chr9:71043600-71050800	Weak transcription	Psoas Muscle	Psoas
12	chr9:71043600-71052800	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr9:71043800-71048000	Weak transcription	Fetal Stomach	stomach
14	chr9:71043800-71050800	Weak transcription	Fetal Heart	heart

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