Variant report

Variant	rs10735826
Chromosome Location	chr12:50925074-50925075
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr12:50909307..50911396-chr12:50923747..50926654,2	K562	blood:
2	chr12:50923171..50925845-chr12:50949350..50951662,2	K562	blood:
3	chr12:50923041..50925350-chr12:50976713..50978567,2	MCF-7	breast:
4	chr12:50924997..50928021-chr12:51009408..51011641,3	MCF-7	breast:
5	chr12:50919290..50923217-chr12:50923759..50928110,5	MCF-7	breast:
6	chr12:50899485..50901952-chr12:50925003..50926748,2	MCF-7	breast:
7	chr12:50924992..50927845-chr12:50972241..50975233,2	MCF-7	breast:
8	chr12:50925067..50926817-chr12:51027774..51030110,2	MCF-7	breast:

No data

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10783367	0.96[ASN][1000 genomes]
rs10783368	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10876041	0.99[ASN][1000 genomes]
rs10876044	0.98[ASN][1000 genomes]
rs10876048	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10876054	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs10876057	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11614911	0.99[ASN][1000 genomes]
rs12099615	0.94[ASN][1000 genomes]
rs12296379	0.84[AMR][1000 genomes]
rs12320201	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12817256	0.83[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs13328926	0.98[ASN][1000 genomes]
rs1402693	0.84[ASN][1000 genomes]
rs1996750	0.82[ASN][1000 genomes]
rs2684902	0.82[ASN][1000 genomes]
rs28414775	0.94[ASN][1000 genomes]
rs28479152	0.98[ASN][1000 genomes]
rs2947617	0.82[ASN][1000 genomes]
rs4129355	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4306347	0.96[ASN][1000 genomes]
rs4517607	0.87[ASN][1000 genomes]
rs4562889	0.84[ASN][1000 genomes]
rs4768848	0.90[ASN][1000 genomes]
rs4768885	0.99[ASN][1000 genomes]
rs4768886	0.99[ASN][1000 genomes]
rs4768887	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs4768894	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs56753963	0.92[ASN][1000 genomes]
rs57512759	0.99[ASN][1000 genomes]
rs59194948	0.92[ASN][1000 genomes]
rs59683461	0.94[ASN][1000 genomes]
rs60239257	0.90[ASN][1000 genomes]
rs60494920	0.99[ASN][1000 genomes]
rs7131993	0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7135222	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7301125	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7302749	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7306387	0.84[ASN][1000 genomes]
rs7487645	0.93[ASN][1000 genomes]
rs7953880	0.99[ASN][1000 genomes]
rs7955310	0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7957060	0.93[ASN][1000 genomes]
rs7978443	0.99[ASN][1000 genomes]
rs7979184	0.98[ASN][1000 genomes]
rs9634264	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9738596	0.90[ASN][1000 genomes]
rs9804759	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820967	chr12:50856613-51002088	Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:50900000-50925400	Weak transcription	Esophagus	oesophagus
2	chr12:50900600-50932000	Weak transcription	Fetal Kidney	kidney
3	chr12:50901400-50925600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr12:50903400-50925800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr12:50909000-50925400	Weak transcription	Lung	lung
6	chr12:50910800-50925400	Weak transcription	Placenta	Placenta
7	chr12:50911400-50926400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr12:50911600-50939800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:50912000-50925400	Weak transcription	Dnd41	blood
10	chr12:50912000-50926000	Weak transcription	Osteobl	bone
11	chr12:50912000-50926400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr12:50912200-50925200	Weak transcription	HUVEC	blood vessel
13	chr12:50914800-50926800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:50915600-50925800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr12:50915600-50926400	Weak transcription	Colon Smooth Muscle	Colon
16	chr12:50916200-50925400	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr12:50916400-50926000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr12:50916400-50931600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr12:50918400-50925400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr12:50918600-50925200	Weak transcription	K562	blood
21	chr12:50918600-50925800	Weak transcription	HSMM	muscle
22	chr12:50918600-50926400	Weak transcription	Fetal Lung	lung
23	chr12:50918800-50938400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr12:50919000-50926000	Weak transcription	Thymus	Thymus
25	chr12:50919000-50926600	Enhancers	Brain Substantia Nigra	brain
26	chr12:50919400-50925400	Enhancers	Brain Cingulate Gyrus	brain
27	chr12:50920200-50926400	Weak transcription	Right Ventricle	heart
28	chr12:50920200-50939600	Weak transcription	Fetal Heart	heart
29	chr12:50920400-50926200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr12:50920400-50927000	Weak transcription	Adipose Nuclei	Adipose
31	chr12:50920400-50931400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
32	chr12:50920800-50925200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:50920800-50925400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr12:50920800-50929200	Weak transcription	Fetal Stomach	stomach
35	chr12:50920800-50939400	Weak transcription	Fetal Brain Female	brain
36	chr12:50920800-50939800	Weak transcription	Fetal Brain Male	brain
37	chr12:50920800-50962400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr12:50921000-50929200	Enhancers	Liver	Liver
39	chr12:50921000-50939400	Weak transcription	Fetal Muscle Trunk	muscle
40	chr12:50921000-50940200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr12:50921200-50927200	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr12:50921200-50939800	Weak transcription	Brain Germinal Matrix	brain
43	chr12:50921400-50925200	Weak transcription	Colonic Mucosa	Colon
44	chr12:50921400-50925800	Weak transcription	Fetal Intestine Large	intestine
45	chr12:50921400-50926400	Enhancers	HepG2	liver
46	chr12:50921600-50925600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr12:50921600-50926200	Weak transcription	Primary hematopoietic stem cells	blood
48	chr12:50921800-50925200	Enhancers	GM12878-XiMat	blood
49	chr12:50922000-50925800	Weak transcription	Fetal Intestine Small	intestine
50	chr12:50922800-50925800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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