Variant report
| Variant | rs1073620 |
|---|---|
| Chromosome Location | chr6:99454754-99454755 |
| allele | A/C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
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rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs12173555 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs1884185 | 0.87[ASN][1000 genomes] |
| rs2180048 | 0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs2300062 | 0.80[ASN][1000 genomes] |
| rs2300063 | 0.80[ASN][1000 genomes] |
| rs2572095 | 0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2572099 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2572109 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2572116 | 0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2747731 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2747733 | 0.90[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2747736 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2747738 | 1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs28488166 | 0.86[ASN][1000 genomes] |
| rs3756986 | 0.80[ASN][1000 genomes] |
| rs55923681 | 0.86[ASN][1000 genomes] |
| rs73505759 | 0.84[ASN][1000 genomes] |
| rs7742800 | 0.80[ASN][1000 genomes] |
| rs9388899 | 0.86[ASN][1000 genomes] |
| rs9388909 | 0.90[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs9402350 | 0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9402371 | 0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv604253 | chr6:98857397-99630038 | Flanking Bivalent TSS/Enh Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 15 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
