Variant report

Variant	rs10740130
Chromosome Location	chr10:52831004-52831005
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10508935	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10740111	0.89[EUR][1000 genomes]
rs10761738	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10761807	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10761831	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10822188	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10822189	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10822194	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822198	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10822210	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10822211	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10822229	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10995458	0.97[EUR][1000 genomes]
rs10995473	0.92[EUR][1000 genomes]
rs10995526	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10995620	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995651	0.87[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10995655	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10995788	0.81[EUR][1000 genomes]
rs12218335	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12220644	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12221226	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12415785	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12767015	0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16913257	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16913956	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1983222	0.94[EUR][1000 genomes]
rs2339675	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2660202	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2666543	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3964605	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4622210	0.89[EUR][1000 genomes]
rs55767509	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7074892	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7084128	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7084767	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7097311	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7912628	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9299457	0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9414805	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9414806	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9414808	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9414810	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9415709	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9415710	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9415711	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9633564	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831873	chr10:52710610-52899540	Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv895394	chr10:52793177-52866503	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1036645	chr10:52804961-53159076	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:52825200-52832600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr10:52829800-52833200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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