Variant report

Variant	rs10741468
Chromosome Location	chr11:93380806-93380807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10765630	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10765632	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10831087	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16919376	1.00[TSI][hapmap]
rs16919390	1.00[TSI][hapmap]
rs16919393	1.00[TSI][hapmap]
rs16919410	1.00[TSI][hapmap]
rs16919459	1.00[TSI][hapmap]
rs1939566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2434983	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs2508574	1.00[EUR][1000 genomes]
rs4284369	0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4595504	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs584474	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs592526	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs604414	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs607826	1.00[TSI][hapmap];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs614003	1.00[EUR][1000 genomes]
rs622231	1.00[EUR][1000 genomes]
rs624883	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483257	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6483263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs653934	1.00[EUR][1000 genomes]
rs655208	1.00[EUR][1000 genomes]
rs657177	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs666470	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs669937	1.00[EUR][1000 genomes]
rs683660	1.00[EUR][1000 genomes]
rs694307	1.00[EUR][1000 genomes]
rs7103189	1.00[TSI][hapmap]
rs7109799	1.00[TSI][hapmap]
rs7119915	1.00[TSI][hapmap]
rs7120747	1.00[TSI][hapmap]
rs7123801	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7927030	0.86[AFR][1000 genomes]
rs7939434	1.00[EUR][1000 genomes]
rs7940598	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
2	nsv975401	chr11:93364502-93390549	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93379000-93387800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr11:93379000-93388800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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