Variant report

Variant	rs10742339
Chromosome Location	chr11:35281100-35281101
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:35279012..35286392-chr11:35294737..35300890,10	MCF-7	breast:
2	chr11:35280014..35285090-chr11:35412088..35415587,8	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs1043101	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10742340	0.92[EUR][1000 genomes]
rs10742341	0.92[EUR][1000 genomes]
rs10768118	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10768120	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768121	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768122	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10768123	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10768126	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836356	1.00[ASN][1000 genomes]
rs10836360	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10836361	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836362	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836363	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836364	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10836367	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10836369	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11033045	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033046	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11033048	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11524863	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12361171	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12796856	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1570214	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1570215	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17378105	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3088168	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35629461	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3763888	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794089	0.91[EUR][1000 genomes]
rs3794090	0.90[EUR][1000 genomes]
rs3794091	0.92[EUR][1000 genomes]
rs3794098	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794099	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794100	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794101	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794102	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3794103	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3847604	0.91[EUR][1000 genomes]
rs4755394	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4755395	0.92[EUR][1000 genomes]
rs4756203	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4756204	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756205	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4756206	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57339940	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6484778	0.92[EUR][1000 genomes]
rs7105505	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7105690	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7121587	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs736374	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7946149	0.92[EUR][1000 genomes]
rs932633	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs932635	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs957350	0.83[EUR][1000 genomes]
rs9633870	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045837	chr11:34893992-35395190	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
2	nsv541004	chr11:35122694-35297414	Strong transcription Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv832120	chr11:35277410-35490304	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:35264400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:35264800-35281800	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr11:35265800-35305800	Weak transcription	HepG2	liver
4	chr11:35269400-35281800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr11:35270200-35292600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr11:35270400-35285400	Weak transcription	Brain Germinal Matrix	brain
7	chr11:35270400-35296400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:35270400-35307000	Weak transcription	Fetal Brain Male	brain
9	chr11:35270600-35284400	Weak transcription	Brain Hippocampus Middle	brain
10	chr11:35271200-35286400	Weak transcription	Pancreas	Pancrea
11	chr11:35274600-35287400	Weak transcription	HSMMtube	muscle
12	chr11:35275000-35281800	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:35275400-35281800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:35275800-35281200	Weak transcription	NHLF	lung
15	chr11:35275800-35281400	Weak transcription	Colon Smooth Muscle	Colon
16	chr11:35277000-35282000	Weak transcription	Aorta	Aorta
17	chr11:35277200-35282000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr11:35277400-35282400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr11:35277800-35286800	Weak transcription	Liver	Liver
20	chr11:35278200-35281400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:35278600-35282000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr11:35279000-35285600	Weak transcription	Brain Substantia Nigra	brain
23	chr11:35279200-35282000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr11:35281000-35283000	Enhancers	Fetal Stomach	stomach
25	chr11:35281000-35283000	Enhancers	Rectal Smooth Muscle	rectum
26	chr11:35281000-35283000	Enhancers	NHDF-Ad	bronchial
27	chr11:35281000-35283400	Strong transcription	Fetal Brain Female	brain

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