Variant report

Variant	rs10742797
Chromosome Location	chr11:47240490-47240491
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:47205217..47215436-chr11:47233934..47241095,26	MCF-7	breast:
2	chr11:47238955..47241531-chr11:47289133..47291443,2	MCF-7	breast:
3	chr11:47239672..47242292-chr11:47268134..47270391,2	K562	blood:
4	chr11:47239591..47242339-chr11:47244082..47246112,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000165912	Chromatin interaction
ENSG00000134575	Chromatin interaction
ENSG00000243802	Chromatin interaction
ENSG00000025434	Chromatin interaction
ENSG00000110514	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10501319	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10769248	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10838652	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs10838658	0.94[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs10838662	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10838663	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs10838664	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11039074	0.85[CHB][hapmap]
rs11039080	0.81[ASN][1000 genomes]
rs11039081	0.83[ASN][1000 genomes]
rs11601798	0.90[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs11603373	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12417519	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs12574410	0.95[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]
rs2029298	0.83[CHB][hapmap]
rs2087215	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.85[ASN][1000 genomes]
rs2242261	0.81[JPT][hapmap]
rs2279238	0.81[JPT][hapmap]
rs2279438	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[JPT][hapmap];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2279439	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3758666	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3758667	1.00[CEU][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3781619	0.81[JPT][hapmap]
rs3922684	0.84[ASN][1000 genomes]
rs4269876	0.84[ASN][1000 genomes]
rs4315028	0.83[ASN][1000 genomes]
rs4498951	0.84[ASN][1000 genomes]
rs4567413	0.83[CHB][hapmap]
rs4576779	0.83[ASN][1000 genomes]
rs4587689	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs4752965	0.95[CHB][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs4752969	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61896133	0.84[ASN][1000 genomes]
rs61896136	0.84[ASN][1000 genomes]
rs61897844	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61897857	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6485726	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7108822	0.83[CEU][hapmap]
rs7112854	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs7114683	0.81[ASN][1000 genomes]
rs7118396	0.81[JPT][hapmap]
rs7124648	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7126005	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7127741	0.84[CEU][hapmap];0.81[ASN][1000 genomes]
rs7128650	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap]
rs7130006	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7937101	0.83[CHB][hapmap]
rs7937410	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7940240	1.00[CEU][hapmap];0.95[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7950753	0.93[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs7951979	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs901747	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs923324	0.94[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897323	chr11:47182926-47460306	Genic enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
2	nsv917316	chr11:47232210-47448882	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:47238200-47241000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:47238200-47241200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr11:47238400-47241800	Weak transcription	Primary B cells from cord blood	blood
4	chr11:47238400-47242000	Weak transcription	K562	blood
5	chr11:47238400-47245000	Weak transcription	Fetal Kidney	kidney
6	chr11:47238400-47246200	Weak transcription	Primary monocytes fromperipheralblood	blood
7	chr11:47238400-47246600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr11:47238400-47255800	Weak transcription	Brain Anterior Caudate	brain
9	chr11:47238400-47269400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr11:47238600-47240800	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr11:47238600-47240800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:47238600-47240800	Weak transcription	Liver	Liver
13	chr11:47238600-47241000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr11:47238600-47241000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
15	chr11:47238600-47241000	Weak transcription	Ovary	ovary
16	chr11:47238600-47241200	Genic enhancers	Dnd41	blood
17	chr11:47238600-47241600	Weak transcription	Left Ventricle	heart
18	chr11:47238600-47241600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr11:47238600-47241600	Weak transcription	Spleen	Spleen
20	chr11:47238600-47241800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr11:47238600-47241800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:47238600-47242400	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:47238600-47242800	Weak transcription	Fetal Intestine Large	intestine
24	chr11:47238600-47243800	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr11:47238600-47245600	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:47238600-47247600	Weak transcription	Colonic Mucosa	Colon
27	chr11:47238600-47253800	Weak transcription	Aorta	Aorta
28	chr11:47238600-47254200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr11:47238600-47255400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr11:47238600-47255400	Weak transcription	Right Ventricle	heart
31	chr11:47238600-47255600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr11:47238600-47255800	Weak transcription	Brain Substantia Nigra	brain
33	chr11:47238600-47255800	Weak transcription	Right Atrium	heart
34	chr11:47238600-47256000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr11:47238600-47259600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr11:47238600-47261000	Weak transcription	Small Intestine	intestine
37	chr11:47238800-47240800	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:47238800-47241000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr11:47238800-47241600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr11:47238800-47241600	Weak transcription	Osteobl	bone
41	chr11:47238800-47241800	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:47238800-47241800	Weak transcription	HSMM	muscle
43	chr11:47238800-47244000	Weak transcription	Placenta	Placenta
44	chr11:47238800-47254000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:47239000-47244800	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr11:47239400-47240600	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:47239400-47242200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
48	chr11:47239400-47243200	Genic enhancers	NHDF-Ad	bronchial
49	chr11:47239400-47244400	Strong transcription	Duodenum Mucosa	Duodenum
50	chr11:47239400-47245000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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