Variant report

Variant	rs10746397
Chromosome Location	chr1:220546725-220546726
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10157171	0.85[AFR][1000 genomes]
rs1022178	0.85[AFR][1000 genomes]
rs10495148	1.00[AMR][1000 genomes]
rs10863547	0.85[AFR][1000 genomes]
rs10863548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10863549	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11118540	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1112147	1.00[AMR][1000 genomes]
rs11799728	1.00[AMR][1000 genomes]
rs11800084	1.00[AMR][1000 genomes]
rs11800803	1.00[AMR][1000 genomes]
rs11801306	1.00[AMR][1000 genomes]
rs11802827	1.00[AMR][1000 genomes]
rs11803715	1.00[AMR][1000 genomes]
rs11810690	1.00[AMR][1000 genomes]
rs11811839	1.00[AMR][1000 genomes]
rs1338769	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1338772	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1361254	1.00[AMR][1000 genomes]
rs1361255	1.00[AMR][1000 genomes]
rs1511696	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17007924	1.00[AMR][1000 genomes]
rs1999935	0.97[AFR][1000 genomes]
rs1999937	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2221832	0.97[AFR][1000 genomes]
rs3860320	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4105051	0.93[AFR][1000 genomes]
rs4282827	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57176776	1.00[AMR][1000 genomes]
rs6541144	1.00[AMR][1000 genomes]
rs6660112	1.00[AMR][1000 genomes]
rs6671023	1.00[AMR][1000 genomes]
rs6673589	1.00[AMR][1000 genomes]
rs6684421	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6696558	1.00[AMR][1000 genomes]
rs6704108	1.00[AMR][1000 genomes]
rs74139644	1.00[AMR][1000 genomes]
rs7512854	1.00[AMR][1000 genomes]
rs7527902	1.00[AMR][1000 genomes]
rs7536389	1.00[AMR][1000 genomes]
rs7550011	1.00[AMR][1000 genomes]
rs7554825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001681	chr1:220425057-220548325	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv535298	chr1:220425057-220548325	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:220542400-220552400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr1:220543600-220552000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:220544400-220547200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr1:220544800-220548000	Weak transcription	Psoas Muscle	Psoas
5	chr1:220545000-220552000	Weak transcription	Hela-S3	cervix
6	chr1:220545200-220548000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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