Variant report

Variant	rs10746988
Chromosome Location	chr9:71614685-71614686
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:71614377..71616166-chr9:71649558..71651998,2	MCF-7	breast:
2	chr9:71197374..71198367-chr9:71614324..71614982,2	MCF-7	breast:
3	chr9:71199122..71199964-chr9:71614246..71615122,3	K562	blood:
4	chr9:71182851..71183578-chr9:71614201..71614782,2	K562	blood:
5	chr9:71319203..71320145-chr9:71614622..71615180,2	MCF-7	breast:
6	chr9:71459669..71460505-chr9:71614463..71615113,2	MCF-7	breast:
7	chr9:71199122..71199719-chr9:71614348..71615097,4	MCF-7	breast:
8	chr9:71614613..71617089-chr9:71618925..71621633,2	K562	blood:
9	chr9:71199034..71199992-chr9:71614240..71615302,11	MCF-7	breast:
10	chr9:71393142..71395397-chr9:71613352..71615098,2	K562	blood:
11	chr9:71198223..71198730-chr9:71614318..71615145,2	MCF-7	breast:
12	chr9:71612570..71616113-chr9:71618356..71621633,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000187866	Chromatin interaction
ENSG00000165060	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1541083	0.83[CHB][hapmap];0.84[JPT][hapmap];0.81[ASN][1000 genomes]
rs2871223	1.00[CHB][hapmap];0.95[CHD][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:27 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422258	chr9:71234845-71663340	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv1017903	chr9:71276951-71690579	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv1051723	chr9:71398713-71971285	Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1053402	chr9:71399722-71819949	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
5	nsv540146	chr9:71399722-71819949	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv1043689	chr9:71399922-71800338	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv540147	chr9:71399922-71800338	Enhancers Strong transcription Active TSS Weak transcription Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
8	nsv1047540	chr9:71401918-71803639	Genic enhancers Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
9	nsv931684	chr9:71417110-71957723	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
10	nsv1049175	chr9:71418242-71986910	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	nsv466393	chr9:71453443-71704827	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
12	nsv614547	chr9:71453443-71704827	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
13	nsv1035823	chr9:71465139-71901672	Genic enhancers Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
14	nsv466396	chr9:71471912-71935577	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
15	nsv614548	chr9:71471912-71935577	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
16	nsv614549	chr9:71506459-71659280	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
17	nsv1051798	chr9:71511805-71792032	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
18	nsv1035477	chr9:71511927-71959487	Enhancers Strong transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
19	nsv466397	chr9:71574757-71843023	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
20	nsv614550	chr9:71574757-71843023	Flanking Active TSS Weak transcription Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv1050692	chr9:71578494-71843023	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
22	nsv893416	chr9:71597840-71888601	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
23	nsv1040539	chr9:71600042-71844108	Weak transcription Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
24	nsv540149	chr9:71600042-71844108	Strong transcription Bivalent Enhancer Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
25	nsv949664	chr9:71607398-71842391	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
26	nsv466398	chr9:71612891-71671116	Flanking Active TSS Genic enhancers Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
27	nsv614551	chr9:71612891-71671116	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:71594800-71628400	Weak transcription	Spleen	Spleen
2	chr9:71595200-71628000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:71595200-71631600	Weak transcription	Gastric	stomach
4	chr9:71595800-71626200	Weak transcription	Colonic Mucosa	Colon
5	chr9:71597200-71626000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr9:71598800-71623200	Weak transcription	Pancreas	Pancrea
7	chr9:71598800-71644600	Weak transcription	Right Atrium	heart
8	chr9:71604200-71617800	Strong transcription	Fetal Intestine Large	intestine
9	chr9:71606800-71623000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr9:71606800-71626800	Weak transcription	HepG2	liver
11	chr9:71607400-71630600	Weak transcription	Aorta	Aorta
12	chr9:71607600-71628000	Weak transcription	Lung	lung
13	chr9:71611600-71616400	Weak transcription	Primary B cells from peripheral blood	blood
14	chr9:71611800-71615800	Enhancers	Fetal Heart	heart
15	chr9:71612200-71614800	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr9:71612400-71615000	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr9:71612400-71615000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr9:71612800-71614800	Enhancers	K562	blood
19	chr9:71613000-71615000	Enhancers	Left Ventricle	heart
20	chr9:71613000-71624600	Strong transcription	Fetal Intestine Small	intestine
21	chr9:71613200-71614800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr9:71613200-71614800	Enhancers	GM12878-XiMat	blood
23	chr9:71613400-71614800	Enhancers	Fetal Kidney	kidney
24	chr9:71613600-71615000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr9:71613600-71619200	Weak transcription	Rectal Smooth Muscle	rectum
26	chr9:71613600-71619600	Strong transcription	Duodenum Mucosa	Duodenum
27	chr9:71613800-71614800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr9:71613800-71614800	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr9:71613800-71615000	Enhancers	H1 Cell Line	embryonic stem cell
30	chr9:71613800-71615000	Enhancers	Primary T cells fromperipheralblood	blood
31	chr9:71614000-71614800	Enhancers	Brain Substantia Nigra	brain
32	chr9:71614000-71617600	Weak transcription	Placenta	Placenta
33	chr9:71614200-71619400	Weak transcription	Right Ventricle	heart
34	chr9:71614400-71614800	Enhancers	Stomach Smooth Muscle	stomach
35	chr9:71614400-71615000	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr9:71614400-71615000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr9:71614400-71618200	Weak transcription	Brain Anterior Caudate	brain
38	chr9:71614600-71614800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:71614600-71615200	Strong transcription	Primary B cells from cord blood	blood
40	chr9:71614600-71616000	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr9:71614600-71617400	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr9:71614600-71619600	Weak transcription	Fetal Lung	lung
43	chr9:71614600-71621200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr9:71614600-71623000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr9:71614600-71625200	Weak transcription	Fetal Stomach	stomach
46	chr9:71614600-71625800	Weak transcription	Primary neutrophils fromperipheralblood	blood
47	chr9:71614600-71626800	Weak transcription	Primary hematopoietic stem cells	blood
48	chr9:71614600-71626800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr9:71614600-71627400	Weak transcription	Monocytes-CD14+_RO01746	blood
50	chr9:71614600-71630800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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