Variant report

Variant	rs10747587
Chromosome Location	chr12:51105300-51105301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 145 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:145)

rs_ID	r²[population]
rs1003033	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10431486	0.85[EUR][1000 genomes]
rs10431535	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10444547	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10459233	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs10459234	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10459235	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10506294	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10506295	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10747584	0.82[EUR][1000 genomes]
rs10747585	0.85[EUR][1000 genomes]
rs10783369	0.85[EUR][1000 genomes]
rs10783370	0.85[EUR][1000 genomes]
rs10783371	0.85[EUR][1000 genomes]
rs10783372	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs10783373	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.84[EUR][1000 genomes]
rs10783374	0.85[EUR][1000 genomes]
rs10783378	0.85[EUR][1000 genomes]
rs10783381	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10783382	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10783383	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10783384	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10783389	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs10876042	0.83[EUR][1000 genomes]
rs10876043	0.83[EUR][1000 genomes]
rs10876047	1.00[CEU][hapmap];0.82[CHB][hapmap];0.85[EUR][1000 genomes]
rs10876051	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs10876052	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs10876053	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs10876056	1.00[CEU][hapmap];0.86[CHB][hapmap];0.84[EUR][1000 genomes]
rs10876058	0.85[EUR][1000 genomes]
rs10876060	0.84[EUR][1000 genomes]
rs10876061	0.86[CHB][hapmap];0.83[JPT][hapmap];0.85[EUR][1000 genomes]
rs10876063	0.85[EUR][1000 genomes]
rs10876065	1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs10876067	0.84[CEU][hapmap];0.86[CHB][hapmap]
rs10876068	0.80[AFR][1000 genomes]
rs10876070	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876071	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876072	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10876073	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10876075	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10876076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10876081	0.82[AMR][1000 genomes]
rs10876089	0.82[AMR][1000 genomes]
rs10876090	0.80[AMR][1000 genomes]
rs10876094	0.80[AMR][1000 genomes]
rs10876095	0.82[CHB][hapmap]
rs10876096	0.84[ASW][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.83[MEX][hapmap]
rs10876097	0.84[ASW][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.88[MKK][hapmap];0.80[TSI][hapmap]
rs11169479	1.00[CEU][hapmap];0.82[CHB][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11169480	0.85[EUR][1000 genomes]
rs11169481	1.00[CEU][hapmap];0.84[CHB][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs11169483	0.80[EUR][1000 genomes]
rs11169487	0.85[EUR][1000 genomes]
rs11169493	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.96[TSI][hapmap];0.85[EUR][1000 genomes]
rs11169498	0.83[EUR][1000 genomes]
rs11169505	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11169507	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11169515	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11169528	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11169532	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11169537	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11169538	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11169539	0.89[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11169544	0.84[ASW][hapmap];0.81[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];0.92[MKK][hapmap];0.82[AMR][1000 genomes]
rs11169552	0.84[ASW][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.82[AMR][1000 genomes]
rs11169554	0.82[AMR][1000 genomes]
rs11169560	0.86[CHB][hapmap];0.80[AMR][1000 genomes]
rs11169561	0.84[ASW][hapmap];0.90[CHB][hapmap];0.93[GIH][hapmap];0.82[MEX][hapmap];0.92[MKK][hapmap];0.80[AMR][1000 genomes]
rs11613488	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs11615933	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12230242	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12231309	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12231317	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12424860	0.82[AMR][1000 genomes]
rs12580051	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12580479	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12582712	0.85[EUR][1000 genomes]
rs12809086	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12827022	0.83[EUR][1000 genomes]
rs1344958	0.84[ASW][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.80[AMR][1000 genomes]
rs17124930	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2090851	0.87[EUR][1000 genomes]
rs2243571	0.81[EUR][1000 genomes]
rs2264734	0.83[EUR][1000 genomes]
rs2684908	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs34867510	0.82[EUR][1000 genomes]
rs35845404	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742063	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742064	0.90[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];0.85[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3809319	0.84[ASW][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.82[AMR][1000 genomes]
rs3825402	0.90[CEU][hapmap];0.86[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3893353	0.85[EUR][1000 genomes]
rs3935138	0.94[CEU][hapmap]
rs3935869	0.83[EUR][1000 genomes]
rs4131769	1.00[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs4238106	1.00[CEU][hapmap];0.86[CHB][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4238108	1.00[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4307773	0.81[CHB][hapmap];0.82[CHD][hapmap]
rs4388959	0.81[CEU][hapmap]
rs4516034	0.85[EUR][1000 genomes]
rs4768850	0.85[EUR][1000 genomes]
rs4768852	0.84[EUR][1000 genomes]
rs4768853	1.00[CEU][hapmap];0.86[CHB][hapmap];0.95[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[EUR][1000 genomes]
rs4768858	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4768866	0.84[ASW][hapmap];0.85[CHB][hapmap];0.80[CHD][hapmap];1.00[GIH][hapmap];0.83[MEX][hapmap];0.92[MKK][hapmap]
rs4768884	0.85[EUR][1000 genomes]
rs4768888	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs4768889	0.85[EUR][1000 genomes]
rs4768892	0.85[EUR][1000 genomes]
rs4768893	1.00[ASW][hapmap];0.85[EUR][1000 genomes]
rs4768895	0.85[EUR][1000 genomes]
rs4768899	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4768903	0.95[CHB][hapmap];1.00[CHD][hapmap];0.89[JPT][hapmap]
rs4768904	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4768906	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768907	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768911	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4768912	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768913	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768914	0.94[CEU][hapmap];0.86[CHB][hapmap];0.84[CHD][hapmap];0.95[GIH][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4768917	0.82[AMR][1000 genomes]
rs4768921	0.82[AMR][1000 genomes]
rs4768922	0.84[ASW][hapmap];0.86[CHB][hapmap];0.80[CHD][hapmap];0.93[GIH][hapmap];0.84[MEX][hapmap];0.88[MKK][hapmap];0.80[AMR][1000 genomes]
rs4768923	0.80[AMR][1000 genomes]
rs4768924	0.84[ASW][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.88[MKK][hapmap]
rs4768925	0.84[ASW][hapmap];0.81[CHB][hapmap];0.93[GIH][hapmap];0.92[MKK][hapmap]
rs55680342	0.84[EUR][1000 genomes]
rs55877451	0.84[EUR][1000 genomes]
rs61926275	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6580761	0.90[CEU][hapmap];0.86[EUR][1000 genomes]
rs7134976	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7138604	1.00[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs7305375	1.00[CEU][hapmap]
rs7307419	1.00[CEU][hapmap];0.85[CHB][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73094900	0.82[AMR][1000 genomes]
rs73096846	0.82[AMR][1000 genomes]
rs7316864	0.90[CEU][hapmap]
rs7956591	1.00[CEU][hapmap];0.84[CHB][hapmap];0.85[EUR][1000 genomes]
rs876078	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876079	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs876080	0.90[CEU][hapmap];0.81[EUR][1000 genomes]
rs952318	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9788159	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51049200-51108600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:51060200-51108200	Weak transcription	Stomach Mucosa	stomach
3	chr12:51063200-51138600	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr12:51063600-51138800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr12:51063600-51145400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr12:51064000-51109800	Strong transcription	Primary B cells from peripheral blood	blood
7	chr12:51064000-51127400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:51067400-51106200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr12:51067400-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr12:51067400-51143600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr12:51067600-51142200	Strong transcription	Primary T helper cells fromperipheralblood	blood
12	chr12:51068200-51106200	Strong transcription	Fetal Thymus	thymus
13	chr12:51068200-51141200	Strong transcription	Placenta	Placenta
14	chr12:51068200-51144000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:51074200-51106000	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr12:51074600-51109800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr12:51074600-51139600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr12:51079200-51120600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr12:51080200-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:51083400-51126000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr12:51084600-51106000	Strong transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:51085600-51118400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr12:51086200-51109800	Strong transcription	Fetal Muscle Trunk	muscle
24	chr12:51086200-51140800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr12:51086200-51142600	Strong transcription	Primary T helper cells PMA-I stimulated	--
26	chr12:51086400-51113400	Strong transcription	Cortex derived primary cultured neurospheres	brain
27	chr12:51086600-51106200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr12:51086800-51106000	Strong transcription	Brain Cingulate Gyrus	brain
29	chr12:51086800-51106200	Strong transcription	Primary B cells from cord blood	blood
30	chr12:51087600-51106200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr12:51089000-51106200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr12:51090400-51145400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr12:51090600-51138400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr12:51093400-51108200	Strong transcription	Liver	Liver
35	chr12:51093600-51128600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr12:51094000-51106200	Strong transcription	Fetal Intestine Large	intestine
37	chr12:51096000-51142000	Strong transcription	Fetal Muscle Leg	muscle
38	chr12:51096200-51106200	Strong transcription	Brain Hippocampus Middle	brain
39	chr12:51096200-51144600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr12:51096600-51106200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr12:51096600-51110200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr12:51096600-51111000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr12:51096800-51109600	Strong transcription	HepG2	liver
44	chr12:51096800-51113400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr12:51097000-51105600	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr12:51097000-51106000	Strong transcription	Brain Substantia Nigra	brain
47	chr12:51097000-51110000	Strong transcription	Primary hematopoietic stem cells	blood
48	chr12:51097000-51110000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr12:51097200-51106200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr12:51097200-51106200	Strong transcription	A549	lung

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