Variant report

Variant	rs10747593
Chromosome Location	chr12:51191781-51191782
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:51182843..51185421-chr12:51191723..51194223,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10735827	0.93[ASN][1000 genomes]
rs10747590	0.83[ASN][1000 genomes]
rs10747592	0.93[ASN][1000 genomes]
rs10783388	0.93[ASN][1000 genomes]
rs10876082	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10876083	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10876085	0.84[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs10876088	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs10876091	0.87[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs11169551	0.84[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs11169553	0.87[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11169556	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1561422	0.93[ASN][1000 genomes]
rs1815010	0.82[ASN][1000 genomes]
rs2246840	0.80[ASN][1000 genomes]
rs2700486	0.80[ASN][1000 genomes]
rs3803181	0.80[ASN][1000 genomes]
rs3825401	0.80[ASN][1000 genomes]
rs4143663	0.80[ASN][1000 genomes]
rs4768862	0.87[ASN][1000 genomes]
rs4768909	0.80[ASN][1000 genomes]
rs4768920	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs57328764	0.82[ASN][1000 genomes]
rs59284993	0.86[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs61926300	0.85[ASN][1000 genomes]
rs6580766	0.87[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6580767	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6580768	0.95[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6580770	0.95[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7303202	0.82[ASN][1000 genomes]
rs7304793	0.95[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7487150	0.89[ASN][1000 genomes]
rs7959129	0.86[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7964642	0.90[ASN][1000 genomes]
rs7979474	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs829125	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs865490	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3414501	chr12:51174503-51534707	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:51159200-51192600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr12:51159400-51192600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:51175400-51192200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:51178400-51192400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr12:51178800-51192600	Weak transcription	Fetal Heart	heart
6	chr12:51180600-51192800	Weak transcription	Esophagus	oesophagus
7	chr12:51180800-51191800	Weak transcription	Aorta	Aorta
8	chr12:51180800-51204400	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr12:51181600-51192600	Weak transcription	HUVEC	blood vessel
10	chr12:51182000-51193000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:51182600-51192400	Weak transcription	HMEC	breast
12	chr12:51184000-51192400	Weak transcription	NHLF	lung
13	chr12:51186000-51192400	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr12:51186800-51193200	Weak transcription	Stomach Mucosa	stomach
15	chr12:51188200-51192800	Weak transcription	Brain Substantia Nigra	brain
16	chr12:51188400-51192600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr12:51188400-51192600	Strong transcription	Hela-S3	cervix
18	chr12:51188400-51193000	Strong transcription	Primary T cells fromperipheralblood	blood
19	chr12:51188600-51207800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr12:51188800-51192400	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr12:51188800-51192600	Strong transcription	Primary T cells from cord blood	blood
22	chr12:51188800-51192600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr12:51188800-51192600	Strong transcription	K562	blood
24	chr12:51189000-51192400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr12:51189000-51192400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr12:51189000-51192400	Strong transcription	Dnd41	blood
27	chr12:51189000-51192600	Strong transcription	Primary B cells from peripheral blood	blood
28	chr12:51189000-51192600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
29	chr12:51189000-51192800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr12:51189000-51192800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:51189000-51192800	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr12:51189000-51193000	Strong transcription	Primary T helper cells fromperipheralblood	blood
33	chr12:51189000-51193000	Strong transcription	HepG2	liver
34	chr12:51189000-51194000	Strong transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:51189000-51195600	Strong transcription	Primary T helper cells PMA-I stimulated	--
36	chr12:51189200-51192600	Strong transcription	HUES48 Cell Line	embryonic stem cell
37	chr12:51189200-51192600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:51189200-51195400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr12:51189400-51191800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr12:51189400-51192400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr12:51189400-51192800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
42	chr12:51189400-51193800	Strong transcription	Adipose Nuclei	Adipose
43	chr12:51189400-51193800	Strong transcription	Brain Hippocampus Middle	brain
44	chr12:51189600-51191800	Strong transcription	Primary hematopoietic stem cells	blood
45	chr12:51189600-51191800	Strong transcription	Thymus	Thymus
46	chr12:51189600-51192000	Strong transcription	Fetal Intestine Large	intestine
47	chr12:51189600-51192400	Strong transcription	Fetal Lung	lung
48	chr12:51189600-51192400	Strong transcription	Fetal Muscle Trunk	muscle
49	chr12:51189600-51192400	Strong transcription	A549	lung
50	chr12:51189600-51192600	Strong transcription	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links