Variant report

Variant	rs10749668
Chromosome Location	chr1:152160437-152160438
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:152019527..152021275-chr1:152158923..152161325,2	MCF-7	breast:
2	chr1:152111690..152113718-chr1:152156883..152160461,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163191	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10749669	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs10788822	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10788824	0.83[YRI][hapmap]
rs10788825	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs10788826	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs11588174	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs12728261	0.86[ASN][1000 genomes]
rs12728908	1.00[CHB][hapmap]
rs12728920	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12756301	0.95[ASN][1000 genomes]
rs1390489	1.00[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1390490	0.81[YRI][hapmap]
rs16842865	1.00[CEU][hapmap]
rs1858481	1.00[MEX][hapmap]
rs2496250	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3126065	1.00[MEX][hapmap]
rs3126087	1.00[MEX][hapmap]
rs3134871	1.00[MEX][hapmap]
rs3134872	1.00[MEX][hapmap]
rs35826906	0.95[ASN][1000 genomes]
rs4845423	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs4845736	0.82[ASW][hapmap];0.83[YRI][hapmap]
rs6587667	1.00[CEU][hapmap];1.00[CHD][hapmap]
rs71515790	0.86[ASN][1000 genomes]
rs71625160	0.86[ASN][1000 genomes]
rs877776	0.88[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1007097	chr1:151832796-152227977	Strong transcription Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
2	nsv1012327	chr1:151835544-152200890	Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription Active TSS Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
3	nsv535159	chr1:151835544-152200890	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	196 gene(s)	inside rSNPs	diseases
4	nsv547853	chr1:152008671-152236760	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	83 gene(s)	inside rSNPs	diseases
5	nsv872442	chr1:152054120-152187641	Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
6	nsv1014095	chr1:152104486-152454591	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv547854	chr1:152145661-152165878	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:152152200-152161200	Weak transcription	Right Atrium	heart
2	chr1:152154400-152161400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr1:152156000-152161200	Weak transcription	A549	lung
4	chr1:152156000-152161200	Weak transcription	HSMM	muscle
5	chr1:152157800-152161200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr1:152158000-152161200	Weak transcription	NHDF-Ad	bronchial
7	chr1:152158200-152160600	Enhancers	Hela-S3	cervix
8	chr1:152158200-152161000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr1:152158200-152161000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:152158200-152161400	Weak transcription	NH-A	brain
11	chr1:152158600-152161200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr1:152158800-152161200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr1:152159000-152161200	Weak transcription	Ovary	ovary
14	chr1:152159800-152161200	Weak transcription	Esophagus	oesophagus
15	chr1:152159800-152161200	Weak transcription	HMEC	breast
16	chr1:152159800-152161200	Weak transcription	Osteobl	bone
17	chr1:152160000-152161200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr1:152160200-152161000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:152160200-152161200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr1:152160200-152161200	Weak transcription	NHEK	skin
21	chr1:152160400-152161200	Weak transcription	Colon Smooth Muscle	Colon

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