Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10792261	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1294440	0.81[JPT][hapmap]
rs1365246	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2194962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4644658	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs475812	0.89[JPT][hapmap]
rs485682	0.81[JPT][hapmap]
rs524995	0.89[JPT][hapmap]
rs535413	0.90[JPT][hapmap]
rs571582	0.81[JPT][hapmap]
rs576295	0.81[JPT][hapmap]
rs585540	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs587634	0.90[JPT][hapmap]
rs588448	0.90[JPT][hapmap]
rs598862	0.89[JPT][hapmap]
rs620368	0.90[JPT][hapmap]
rs641829	0.90[JPT][hapmap]
rs646924	0.89[JPT][hapmap]
rs6591563	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs6591564	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs661376	0.84[CHB][hapmap];0.90[JPT][hapmap]
rs662674	0.83[CHB][hapmap];0.90[JPT][hapmap]
rs668095	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs668134	0.84[CHB][hapmap];0.89[JPT][hapmap]
rs7104122	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7127750	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832174	chr11:59909267-60073908	Enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1053558	chr11:59979460-60061209	Weak transcription ZNF genes & repeats Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:60054200-60057000	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr11:60055400-60056800	ZNF genes & repeats	Placenta	Placenta
3	chr11:60055400-60057000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr11:60056000-60057000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
5	chr11:60056400-60056600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
6	chr11:60056400-60056800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:60056400-60056800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell

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